Bgla024467.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294051.1:194704-196747[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0088 0.5 11.8 0.1 1 23 44 66 44 66 0.97 2 12 0.0027 0.15 13.5 3.1 1 23 99 121 99 121 0.95 3 12 2.9e-05 0.0016 19.7 0.3 1 23 127 149 127 149 0.96 4 12 3.5e-05 0.002 19.4 0.2 1 23 155 178 155 178 0.96 5 12 8.2e-06 0.00046 21.4 3.1 1 23 184 206 184 206 0.98 6 12 0.001 0.058 14.8 1.9 2 23 213 234 212 234 0.97 7 12 0.0023 0.13 13.7 0.5 3 23 268 288 267 288 0.97 8 12 2.5e-05 0.0014 19.9 2.9 2 23 298 319 297 319 0.97 9 12 1.6e-06 9.3e-05 23.6 2.5 1 23 326 348 326 348 0.98 10 12 0.00028 0.016 16.5 1.2 1 20 354 373 354 376 0.93 11 12 0.00055 0.031 15.6 3.7 1 23 382 404 382 404 0.97 12 12 0.00019 0.011 17.1 0.7 1 23 410 432 410 432 0.97
Sequence Information
- Coding Sequence
- atggaGAGTGAAAGTGATTTTGATACAGATTACGATAGTGAAAATGCTTCTGAAGACGCATACAGTGCTTCCCAAACTACTCCTGAACCAAAAATAACTATTGAGCCTTTAAATGATGAAAAACATCTTTTTCAATGTGGGAGctgcaaaataaaattcataaacATTGTCCAGCTAAAAATCCATGGAATGGTGCACAAAAGAGACCAAAACTGTTTCATGTGTGATGATctacacataaaaaacaaaaaccaatttttcgGTCATGTTAGGAAGCACATGTGCCCCAAACCTTTTCTGTGTAACTACTGTGACAAGACTTTTCCCAGTCACAGAGAAACCAAGCTTCATAGTAGGGTGCACAGTGATGAGAGACCATATAAATGTAGCGAATGTGGAAAGGGGTTCAAAACTATAGGGACACTGAATGATCACGAAGTGAGGCACAGTGGTGTAAAGAGGTTTAAATgcaagATCTGCGAAGGAGCATTTGCGACAGCCACAAGCCTAAGAAGGCACATTAAGGCTTTACATGAAGCCATAAGAAACTACAAGTGTCACTTTTGTGAGCAAACCTTCTCAAGCAAAGAATCTCTAAAGGAGCACATTTCGATACATAAAGATGAAGATCCCCTGAAGTGTGAACTGTGCAATTTAAGATTTGAAACCAAAGAAAATTTCAGTGAACACAAAAACAAACATATCGAGTTAAAAGAAAGCGGTTTTTGTGTGTATTGCGCAAATAGTacgttttatttcaatttacaaGACCATATTGATAAGAAACACAGTGCCAGACCTTGCAAAGTCTGTAACCTAAATTTCTATGATGAAAAATCCTTAGATAATCATCTAAAAAGTCATATAGAACTAGCGACTAAAGAGGAGTTAGTttgtaaaatttgcaaaaaacattTTGACTTTCCCCGGTATTTGAAAGCACACATGAAAAGACACGAAGATacgtacaaaaaatacaaatgcgAAAAGTGCGGAAAGTGTTTTTCTTCCACTCGCGATCTTAACGATCACGTGAACGTTCATTTGAacgtaaaaaatttcaaatgtcCGATTTGCGAAAAGGCGTTTAGAACCAAACAGTGTGTCGCAAAACATTTGCCCATTCATTCTGATAAAAGGCCGTTTCAGTGCAAAGTTTGCGAAAAAACGTTCAAAAAACAGTCGATTTTGCGCAAACACAGTTTTACTCACGAGCCCACTCCTCAGTTTGAGTGCCAGGAATGTTTTAAAGCATACAAAACGAGGGAAGGTTTGCGCGTTCATAAAATTAGTCataataagtaa
- Protein Sequence
- MESESDFDTDYDSENASEDAYSASQTTPEPKITIEPLNDEKHLFQCGSCKIKFINIVQLKIHGMVHKRDQNCFMCDDLHIKNKNQFFGHVRKHMCPKPFLCNYCDKTFPSHRETKLHSRVHSDERPYKCSECGKGFKTIGTLNDHEVRHSGVKRFKCKICEGAFATATSLRRHIKALHEAIRNYKCHFCEQTFSSKESLKEHISIHKDEDPLKCELCNLRFETKENFSEHKNKHIELKESGFCVYCANSTFYFNLQDHIDKKHSARPCKVCNLNFYDEKSLDNHLKSHIELATKEELVCKICKKHFDFPRYLKAHMKRHEDTYKKYKCEKCGKCFSSTRDLNDHVNVHLNVKNFKCPICEKAFRTKQCVAKHLPIHSDKRPFQCKVCEKTFKKQSILRKHSFTHEPTPQFECQECFKAYKTREGLRVHKISHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -