Bgla028813.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:4281579-4284254[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0013 0.073 14.5 1.8 1 23 72 94 72 94 0.98
2 17 0.0007 0.039 15.3 2.8 1 23 99 121 99 121 0.98
3 17 0.01 0.57 11.7 0.4 5 23 223 241 222 241 0.95
4 17 0.0065 0.37 12.3 2.4 1 23 246 268 246 268 0.99
5 17 0.00012 0.0066 17.8 3.4 1 23 363 385 363 385 0.98
6 17 2.7e-05 0.0015 19.8 3.2 1 23 390 412 390 412 0.99
7 17 0.00056 0.032 15.6 3.0 1 23 506 528 506 528 0.97
8 17 5.6e-05 0.0032 18.8 3.7 1 23 533 555 533 555 0.99
9 17 0.15 8.4 8.0 2.8 1 23 626 649 626 649 0.96
10 17 1.5 82 4.9 1.3 1 23 655 677 655 677 0.96
11 17 5.8e-05 0.0033 18.7 2.2 1 23 683 705 683 705 0.99
12 17 0.00075 0.043 15.2 2.6 3 23 714 734 712 734 0.97
13 17 0.0035 0.2 13.1 1.7 1 23 740 763 740 763 0.97
14 17 0.0052 0.29 12.6 8.3 1 23 769 791 769 791 0.98
15 17 0.0061 0.34 12.4 4.3 1 23 798 820 798 820 0.98
16 17 6.8e-05 0.0039 18.5 1.6 1 21 830 850 830 851 0.95
17 17 0.0028 0.16 13.4 1.2 2 20 859 877 859 879 0.94

Sequence Information

Coding Sequence
ATGGAATGGAAagacacaaataaaaatatagtaaagGATGGTGGGAATGAATATGGGGGCAGGTCCATTAATGTTAAACCGTTAAATGAAGAAATAATAATAGACGATGAACTTGAAAATGAAGATTTTGAACCAGATACAGAACATGAAGCTAAACCTAAATATAAAGAAACTGTAGATAAATCTTCTGAAAATAATCAGAAACAGAAACTTTTTAAATGCttgttttgtgaaaaaattttcACTTTGACCAGTGATCTAATAACTCACTACAAAAGCCACTCTGTAAAATCTTACAAATGTGGTCAATGCAAGAAAAAGTTtgcatttaaaacattattaaaacaGCATAGTCAAATACATACAGCACAAAAAAAAGGTGAAAAAGACATTGTAACTGgtcaaattgataaaaaagaaTGTGGTGATACAAGTGATACAAATTCTTTAAAAGAAGAAGCTTTAACTAAAGaaataatactaataaatgATGAAACCGAATGTGATAGTAATGTCAACAATCAagaacttttaggaaaaataaaagaagattTGTATGAAGATTTTAAAATGGAGATTACAGAACCTGAAATTATGcccaaaagtgaaaaaaatatggataaaacTTTCAAggataatctacaaattaagtcatttaaattctctttttgtgaaaaaagttttagtttaaaaagcGAGCTTATAACTCATTACAGCAGTCATTCTGTTAAGACTTATGAATGTGAGCAATGTCGGAGAAAGTTtatgtttgaaatatttttaaaacagcacATGAAAATGCATGAAGCACAAAAAGCTGATGTGAAAGTCAATGTAAACAATCAGATTGATAAAGAAGAATCTGAAGATAGGACCACTgatataaatactttaaaagaaGAAGCAGAAGAAATAATACTAATAGATGATGAAATTGaaaatgataatttaaaaagtcgaGAGCTcctaggaaaaataaaaaaagaatctgATGATGATTTTAAAATGGAGATTTTAGAACATGAAGTTAAGTCCCAAAATGAACAAAATGTGGATGAATCTAACGAgaataaacaacaaaaaatatttaaatgctcATTTTGCGAAAAACGTTTCACTTTGAAAAGTGATCTAATAACTCATTTTAGAAGTCACTCTGATAAAACTTACAAATGTGATCAATGTCAGAGAaagtttaaatttgaaataaatttaaaaaagcacaTTAAAATGCATGAATCACAAAAAGCTGGGGAGATAGACAATGTAATTAATCAAATTGATAAGGAAGAATGTGAAGATAGGACACCTTATATAACTACTTTAAAAGAAGCAGAAGAAATATTACTAATAGATGATGAAATTGAAactgataatttaaaaagtcgaGAGCTcctaggaaaaataaaaaaagaatctgATGATGATTTTAAAATGGAGATTTTAGAACATGAAGTTAAGCCCCAAAATGAACAAAATATGGATGAATCTAACGAgaataaacaacaaaaaatatttaaatgctcATTTTGCGAAAAACGTTTCACCTTGAAAAGTGATCTAATAACTCATTTTAGCAGTCACTCTGATAAAACTTACAAATGTGAGCAATGTCAGAGAAAGTTtacatttgaaatatatttaaaaaaacacatgaaaatgcataagaaacaaaaaactgatgagaAAGACAATGTAGCCAATCAGATTGATAAAGAAGAATGTGAGCATAGGCTCACTGatataaattctttaaaagAAGAAATAGAAGAATCTGATGATTGTTTCAAAATGGAGGTTTTAGCTGAAGAACTTAAGTCCCAAACTAAAGAAACTAATAATAATTGCTCTGAAGATGTACAAAAAATGAATACATATAAATGTTTGGTTTGCCACAATAAATTTCGATCAGAGCGAGGACTATCATACCACAAAATAAGGGTTCATATGAAAGACAAACCATTTAAATGTGATTTTTGCGACTCGCAGTTTATCTTATCTTCTTCAAAAGACATTCACATAAAATTTCACGAGAACAAAAAAGCGTATCAGTGTTCAACATGCAATGAAAAATTTGCCTTCAAAAAGAGTCTTCGGGTACATGTGAAAACACACGCAACAGACTTCAAAAACCAGAATTGCGAGTTTTGCGGGAAGGGGTTTAAACACGAGAGAATGTTATTGACTCATCTTAAATCACACactaatccaaaaaaatacaaatgcaGTCAATGTGATAAAAAGCTTTCCACAGAACTTACTTTATTTAACCACAAAAGACTAGTACATGCAACATCTTTTTCACATCAATGTTACCACTGCACCAAAAAATTCGAAGAAAAATCTGAGTTACATGAGCATCTGAAAACGCACGTTAATAAAAAGCATAGATACGTGTGCGAAAATTgtcctaaaaaatgttttagattgACACAATATAATGTTCATAGAAAGACGCACGGTTTAGATGCCTATGTGGAATCACCTTATAAATGTAAACGATGTGATAAGGAGTTCCGACAGAAAAACCTCCTAGATAAGCATATGGAAAAATGTAACCAACCAACCAATCCCAGTTGTCAAAAGTGTAACTACAAATATTCAAATCGATATTCTTTATCAAAGCATATTCTGTTTCGGAGGGAGGAGGAATTATTTGAATGcacatgtaaataa
Protein Sequence
MEWKDTNKNIVKDGGNEYGGRSINVKPLNEEIIIDDELENEDFEPDTEHEAKPKYKETVDKSSENNQKQKLFKCLFCEKIFTLTSDLITHYKSHSVKSYKCGQCKKKFAFKTLLKQHSQIHTAQKKGEKDIVTGQIDKKECGDTSDTNSLKEEALTKEIILINDETECDSNVNNQELLGKIKEDLYEDFKMEITEPEIMPKSEKNMDKTFKDNLQIKSFKFSFCEKSFSLKSELITHYSSHSVKTYECEQCRRKFMFEIFLKQHMKMHEAQKADVKVNVNNQIDKEESEDRTTDINTLKEEAEEIILIDDEIENDNLKSRELLGKIKKESDDDFKMEILEHEVKSQNEQNVDESNENKQQKIFKCSFCEKRFTLKSDLITHFRSHSDKTYKCDQCQRKFKFEINLKKHIKMHESQKAGEIDNVINQIDKEECEDRTPYITTLKEAEEILLIDDEIETDNLKSRELLGKIKKESDDDFKMEILEHEVKPQNEQNMDESNENKQQKIFKCSFCEKRFTLKSDLITHFSSHSDKTYKCEQCQRKFTFEIYLKKHMKMHKKQKTDEKDNVANQIDKEECEHRLTDINSLKEEIEESDDCFKMEVLAEELKSQTKETNNNCSEDVQKMNTYKCLVCHNKFRSERGLSYHKIRVHMKDKPFKCDFCDSQFILSSSKDIHIKFHENKKAYQCSTCNEKFAFKKSLRVHVKTHATDFKNQNCEFCGKGFKHERMLLTHLKSHTNPKKYKCSQCDKKLSTELTLFNHKRLVHATSFSHQCYHCTKKFEEKSELHEHLKTHVNKKHRYVCENCPKKCFRLTQYNVHRKTHGLDAYVESPYKCKRCDKEFRQKNLLDKHMEKCNQPTNPSCQKCNYKYSNRYSLSKHILFRREEELFECTCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-