Basic Information

Insect: Brachypterus glaber
Gene Symbol: clz9
Assembly: GCA_958510825.1
Location: OY294044.1:59838212-59878640[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0037 0.21 13.0 0.1 2 23 10 31 10 31 0.96

2 19 0.084 4.8 8.8 0.0 3 23 39 59 37 59 0.96

3 19 4 2.3e+02 3.5 0.5 2 23 71 92 70 92 0.94

4 19 0.00068 0.038 15.4 0.5 1 23 118 140 118 140 0.97

5 19 2.6e-06 0.00015 22.9 2.2 1 23 184 206 184 206 0.98

6 19 0.97 55 5.4 11.8 1 23 212 234 212 234 0.98

7 19 0.043 2.4 9.7 0.6 3 23 241 262 240 262 0.89

8 19 0.001 0.059 14.8 2.7 2 23 340 361 339 361 0.96

9 19 0.0028 0.16 13.4 1.8 1 23 367 389 367 389 0.97

10 19 9.2e-05 0.0052 18.1 1.7 1 23 395 417 395 417 0.98

11 19 4.7 2.7e+02 3.3 1.5 1 23 423 446 423 446 0.88

12 19 0.031 1.7 10.1 1.7 1 23 789 811 789 811 0.94

13 19 5.3e-07 3e-05 25.1 2.4 2 23 819 840 818 840 0.97

14 19 1.9e-05 0.0011 20.2 1.2 1 23 846 868 846 868 0.97

15 19 0.001 0.058 14.8 3.3 1 23 876 898 876 898 0.97

16 19 0.099 5.6 8.5 3.2 1 23 904 927 904 927 0.97

17 19 0.00011 0.0065 17.8 0.2 2 23 1058 1079 1057 1079 0.97

18 19 0.064 3.6 9.1 1.0 1 23 1085 1107 1085 1107 0.90

19 19 1.1 61 5.3 0.3 3 21 1115 1133 1114 1134 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0037	0.21	13.0	0.1	2	23	10	31	10	31	0.96
2	19	0.084	4.8	8.8	0.0	3	23	39	59	37	59	0.96
3	19	4	2.3e+02	3.5	0.5	2	23	71	92	70	92	0.94
4	19	0.00068	0.038	15.4	0.5	1	23	118	140	118	140	0.97
5	19	2.6e-06	0.00015	22.9	2.2	1	23	184	206	184	206	0.98
6	19	0.97	55	5.4	11.8	1	23	212	234	212	234	0.98
7	19	0.043	2.4	9.7	0.6	3	23	241	262	240	262	0.89
8	19	0.001	0.059	14.8	2.7	2	23	340	361	339	361	0.96
9	19	0.0028	0.16	13.4	1.8	1	23	367	389	367	389	0.97
10	19	9.2e-05	0.0052	18.1	1.7	1	23	395	417	395	417	0.98
11	19	4.7	2.7e+02	3.3	1.5	1	23	423	446	423	446	0.88
12	19	0.031	1.7	10.1	1.7	1	23	789	811	789	811	0.94
13	19	5.3e-07	3e-05	25.1	2.4	2	23	819	840	818	840	0.97
14	19	1.9e-05	0.0011	20.2	1.2	1	23	846	868	846	868	0.97
15	19	0.001	0.058	14.8	3.3	1	23	876	898	876	898	0.97
16	19	0.099	5.6	8.5	3.2	1	23	904	927	904	927	0.97
17	19	0.00011	0.0065	17.8	0.2	2	23	1058	1079	1057	1079	0.97
18	19	0.064	3.6	9.1	1.0	1	23	1085	1107	1085	1107	0.90
19	19	1.1	61	5.3	0.3	3	21	1115	1133	1114	1134	0.95

Sequence Information

Coding Sequence: ATGGCTCTACATACAAAGGAGAAACCAAGATGTCCTATATGTGATATAGCCTTTCAAAGGGTAGCCAGTCTCAAATCACATTTATTTATACATCAAGTAGAGGAAACAATTGCTTGTGAAGAATGTCAATCCGaattcGCGAAAGAAGAAGACTTATTAAAGCATTTAGAAGTACATGCATCAAATGCTACACCAGAAAGTAAGTCACTCATATGCACAAGTTGTCAGGTACAATTTGATACCAAGTTGGAGTACAAGTTACACGTTTCTCAACATGTAAAAATGAAAAGGATGTTAAATAGTAGTAAAAAGTTAAGGAGGAACGCTAATTCGGGGGGTCAAAGTAGGCCTTACGATTGTGCCTATTGTAAAAAGgcttttcaaaaagtttcacTTTTGGAAAGGCATGAAAGGATACATACTGGAAAACGGCCGTAtgagGATTTTATGGAAACGGAAAAAAACGAGGAAGGAATTATCGTAGAAAGGCATAATAATGATGTTAGAAATTATGTTATAAAGCAAAAGAAGATTGACGATGTCAGATACTATTTTTGCGATTATTGcacgaaaaaatttaagaaacctTCGGATTTGATGAGACATTTGAGAATTCATACCAAAGAAAAACCCTTCAagtgcaaatattgtaatcagtgtTTTACACTAAAATCTACTCTTTTATGTCATCATAAAACCCACATAGGAAAAAGTGATTATTGTTGTATAATTTGTGGAGGATATTTTTCCTCTTCAAGAGCTTTAAACGTACATATGGGgaaacACGCAAATGAAATTACAAGTTACCAATGCTCCAAATGCAATGCATTATTTACGAACATTGACGATGGAAAATTCCACGAACTCGAAAATAAAGACGACAGTTCTGGACCACATATCGTTAAATCGTTACTTAGAAACGAGTTGAAAAACGATAGAAGCGATTTGGTACCGCTGAAATCaccaaaatctaaaaattccAATACAGAAAATAATTCTTCGGTCTTAAAGCCGCTTCATTGTACGATTTGTAACGCCAGATTTTCGAAATCATTTACGTTGCAACGTCACCTGCAAATTCATACCAGCGAGAGAAAATTTAAGTGTGTAAAATGTCCagcGTCTTTTACTACAGCACATAGATTAAGAGATCACTTATTATATCACTACAATATAAAAACTCACGAATGCGGAATCTGCGAAAAGAAATTCGTCAGTTCCTACGTTTTGAAGAGACATCAGCTCACGCATAACAAAGTAAAACCCTTTGTGTGCCCTTACTGTAAAAGTGATTTTAGAACGATAGCGGTGTGCAGAGAGCACAttaaaaaagtgcataaaaaagaaatatcacTAAAAGCCCTCAGAAAACTAATAAATCCTGAATCCAAAGAAAGATCTGAACCTGAATCTCAAAATACGCCTAAAATCAATGTAATAAGTATAGAAAATATTTCACCAGAGGTGAATCAAAATTTACCTGAAGTTGTAAGTGAAAGTGAGCCTCAAATATTGGAAAAATCTACCACAGAACCAGCAACAAGTGttataattgaaaatttaaatgctGAAGATTTACTTCATACTTCTGAAGTTAATAGATCTGAAGTTAATATACCTGAAGTTTCTGAAaaaaacaTTAGCAGTACGCCATACTTTGGGCTTCCACCAAATACAAACATAGAAATATTAGCAGAAAGTGTGGCGACAAATTTAGAAGAGGCCAATAATCAATCATACCAAACTATTTTTATCAATTCTGATGACCTGCAGTTAAATGAGAATCTTAACATATTTAAGTTACagaataatgaTAACTTATTATTAAATGATCTACAAGATAGcaacattttatttaacataGGAACGTTGAACAACGAGTTGGAATCTCAAGCAACTCAAATCGTAAATactcaacatttttttaatagaactaTATCCAATTCTGAAAACAATCACTTGACAAATGTTGCCGAACTCCCAAGTAAACCGATAAATTTAAGTAGCACTGATAAAACGGAATCGAAATCAAAAACTCATGTGAATGAAATCAACGTTAATAGTTTGCTAAATACTGAGTTGTATCCGAATGTAATAAATAGCGATAATGATCAGCAGGATGTCGCTTTTAAAGAAATATCCCCAGACACAGAAGTTCCTAAAAATAATGTACAAATAGCAACTTTTATAACATTTAATATAGATGCTAAAGAAACAGatttaaaaacagatttaaaTGTTAACACAAATCCAGAAGAAACTACTTCCAAAGAAGCGCCAGTTGAAAGTGCtactaaaaaaagtaacaacCATCCCGAAACTACAAAAGTTATcgttaaaaagtacaaaaaaactaTTCCTGACTTTGAGTGTATCTTATGTAAGGAAGTTTTTACAAATAGACACTGGTATACAAAACATTTGGCTTCTCATGGTTCAAGTGCGCTGATCAAAACATGTTCATATTGTAACAAGACATTCAAAAAGGCTTCAGATTTGaaaaggcaCATAAGAATCCACACTGGCGAACGACCTTTCGCGTGCACTGTCTGCGAGAAAAAGTTCACATTAAAATCAACTTTGGCTTCACACATGAAAACCCACGATTCAATTATTAGCAAAGATTTTAATTGCGTAATTTGCAATACGTTTTTTTCGTCGAAGTGTGCACTAAAAACGCATATGAATTTGCATACAGaaaaaagacCATACAAATGTCGACATTGCGAGTTTATGTTTATCAGTGCCAGTACGAGAAATAATCACGAAAAAGTGCGCCATCTAATGAAGAAAGACATcagcaaaaacaaacaaattactAATTTACTTGAATCTGTAGCCAACGACATAAGTAATGACGAATTTATTTCTGCAGACGTGAATGAAAGCAATATGgaCGAAGAAGAAAATAGAATACCAGTTTCAGACACTATAGAGATTGACCTTCTACTTTTACAACAACTGCAATCCGGTATAATTCTAGAACCAAACAATCTAGAACCAAGCAGTTTAGAATCAAATAATATAGAAACAAACACTATAGAAACACCACAATTTCTAGAACCAAATGACGCCACTTTACTGAATTTTAAACCACTAGAACTGGAGAACAATTCAAAAACTTCTGAAAATAGCGAAAATAATCTGGTAAATGGAAAACCTAGAAACTTGGAATGCGACATCTGCGGGAAAATGTATGCAAGCAAGGCTGTTTTGACGAAGCATCGAAAAATACACGGTATAGACAAGAAGTATTATTGTAGCCTTTGCAAAAGGGGCTTTGATACTGAAGAAGACTTTACTAATCACGATAATATGCACAGCGGGTTTAGACCGCATGGTTGTTTTGTGTGCAACAATACGTTCGAGCAGATGCAGGGATTAAAGACGCACTTAAAAAGTTGCGAATTCGAGCACATCAATCGGCATGTCGGCGGCGTGATATGCGAATATCTACTTTATGGGCCACCTGTTGATGCAACGCTTTCCCTCTTACACTGGCTTTTTACTTCTAGACACTTTATTGTCGAAAAATTGACTTATTTGGAAatGCCAAAAAAATACAGACGCAAGACGAATAGAGCGGATATTAATGAACGTTTCATAAAATGCGCCATAAAAGACTACTCCAGAAAGAAATGTGGCTTATTAGAGGCATGCCGCAGATATGGCATAAAAAAATCAACGTTACAATCaagaataaaaaagttgaaaagcCTTGATCATAATCTTTATGCTGATTCCACAGATTCCGGAAACGAATCTGAAAATGAACAAATGCCTTTAACTAATAAATATTCTGTAAATCAGGTGTTTGCAAAAAATGAGGAATTAGAGCTTGCAGGGtatttaaaaacttcttcaGATTTAGGCTATGGGCTTACCTATCGCCAAATACGAATTTTGGCCTATGATTTTGCCAAGTCTAAGAAAAAGCTGCCAAAGAAATGGGAATCAAATGAAATTGCCGGTCTCGAATGGATGAAAGGATTCATGTCAAGACACACAGATTTGTCATTGAGAAAACCAGAAAATACAAGCATTTTTAGAGCAACCGCGTTTAACAAAGACAGGGTGATggaattttttgataattatgcACAAGTTCTTAGAAAATACAGTTTTAAGGGAGGAAATATTTACAATCTTGATGAAACTGGAATTTCAACGGTTTTAAGAAGTGTTAAAGTTGTTACAACAAAAGGAAAAAAGCAGGTGGGTCAAGTAGTTTCTGGGGAAAGAGGGGAACTGGTAACATTTTTAGCTATAGTAAATGGTCAGGGAGGTACTATACCTCCTGTTTATGTCTATCCGCGCGTTAGAGATCCGGAGCAATATTTTGGGGATGATGGACCTGAAGGAAGTTTAGTCCTAGGAAATAAAAGCGGTTGGATGAATTCAGAATTATTTATGTCTGTACTAAAACATATTGCTAACCATACGAAATGTTCAGTagaaaatagaattttattaatattagacaACCACAAATCACACATATCCATAGAAGGTATACAATTCTGCCGAGAAAAGGGAATAAGTTTGCTATCCTTTCCACCACATACTACACATAGATTACAGCCTTTGGATGTAGGATTATATGCACCTTTTAAAAATGCCCTTTCCATTGCCTATAACGATTGGATGCTGTCTCACCCTGGGCGTCCAATAACAATAAGAAATATTGCTTCATTAAGTTGCATTGCTTATAAAGAGGCATTTACGCTGAATAACATTACTAGTTCTTTTAAAAAGCCCGGAATTTGGCCAGTTAATAGATTGGCATTTACAGATAATGACTTTATTGCAAGCAGCGTtactaatgtaaaaaaaaccgATAACCATAAAAGAGACCACCTGGTTGGGGAAACCGATACAAGCGAAGAAGTACAAAAAgataacaatataaatttagAAGAGGAAGAAACCGATATAAATGAGGAACAAGTAGAAACCAATAAGCAAGAAGAAGTAGAAAAGAATACGAAAGGCGATAAACCTTCCTCATCgaaagtttacaaaaatttagatATTACGCCACCTTCACAATTAACGAACAATACAAGTTTAACTGATATTAGGCCTTTGCCAAAATTTGTAGGAGAAAGAAAGAAGAAAAACAACCGAAAATATGAATCTAAATCACGGGTGTACACCTTTACCCCCGAATATAAGGAACtggaaaatgaaataaaaagaaaaagggaaatagaaataaaaaaaaataataaaaaaactaaaagatgtgtttttaaagaaattaattacaACGATTGGGATACGGACTTATCAGTTACATTTGCATCATCAGGAGACGAAAGTAGTCATGAGTGCGATGAAGAATTTCTTAAAATGGGAATTGATAGAAATCCAGTAAAAGGAGAATTTGTTTTAGTAaggttttacaaaaataaaaaagcaatttaTTATGTTGCAGAAGTTTTAAATATCGATAATAATGATTTTGAAGTCAAATTTTACCgaaaatctttaaagaaagatcaTTGTTTTGTTAAGCCCACGGTTGACGATATTTCAACAATTTCCGAAAGCGATATTAGAATAATATTGCCCAATCCCGTTCATATGGGAGCCACTAAAAGACAAAAtgcatttattaattttggattaACCTTTAACTCAATCAATATAAGATAA
Protein Sequence: MALHTKEKPRCPICDIAFQRVASLKSHLFIHQVEETIACEECQSEFAKEEDLLKHLEVHASNATPESKSLICTSCQVQFDTKLEYKLHVSQHVKMKRMLNSSKKLRRNANSGGQSRPYDCAYCKKAFQKVSLLERHERIHTGKRPYEDFMETEKNEEGIIVERHNNDVRNYVIKQKKIDDVRYYFCDYCTKKFKKPSDLMRHLRIHTKEKPFKCKYCNQCFTLKSTLLCHHKTHIGKSDYCCIICGGYFSSSRALNVHMGKHANEITSYQCSKCNALFTNIDDGKFHELENKDDSSGPHIVKSLLRNELKNDRSDLVPLKSPKSKNSNTENNSSVLKPLHCTICNARFSKSFTLQRHLQIHTSERKFKCVKCPASFTTAHRLRDHLLYHYNIKTHECGICEKKFVSSYVLKRHQLTHNKVKPFVCPYCKSDFRTIAVCREHIKKVHKKEISLKALRKLINPESKERSEPESQNTPKINVISIENISPEVNQNLPEVVSESEPQILEKSTTEPATSVIIENLNAEDLLHTSEVNRSEVNIPEVSEKNISSTPYFGLPPNTNIEILAESVATNLEEANNQSYQTIFINSDDLQLNENLNIFKLQNNDNLLLNDLQDSNILFNIGTLNNELESQATQIVNTQHFFNRTISNSENNHLTNVAELPSKPINLSSTDKTESKSKTHVNEINVNSLLNTELYPNVINSDNDQQDVAFKEISPDTEVPKNNVQIATFITFNIDAKETDLKTDLNVNTNPEETTSKEAPVESATKKSNNHPETTKVIVKKYKKTIPDFECILCKEVFTNRHWYTKHLASHGSSALIKTCSYCNKTFKKASDLKRHIRIHTGERPFACTVCEKKFTLKSTLASHMKTHDSIISKDFNCVICNTFFSSKCALKTHMNLHTEKRPYKCRHCEFMFISASTRNNHEKVRHLMKKDISKNKQITNLLESVANDISNDEFISADVNESNMDEEENRIPVSDTIEIDLLLLQQLQSGIILEPNNLEPSSLESNNIETNTIETPQFLEPNDATLLNFKPLELENNSKTSENSENNLVNGKPRNLECDICGKMYASKAVLTKHRKIHGIDKKYYCSLCKRGFDTEEDFTNHDNMHSGFRPHGCFVCNNTFEQMQGLKTHLKSCEFEHINRHVGGVICEYLLYGPPVDATLSLLHWLFTSRHFIVEKLTYLEMPKKYRRKTNRADINERFIKCAIKDYSRKKCGLLEACRRYGIKKSTLQSRIKKLKSLDHNLYADSTDSGNESENEQMPLTNKYSVNQVFAKNEELELAGYLKTSSDLGYGLTYRQIRILAYDFAKSKKKLPKKWESNEIAGLEWMKGFMSRHTDLSLRKPENTSIFRATAFNKDRVMEFFDNYAQVLRKYSFKGGNIYNLDETGISTVLRSVKVVTTKGKKQVGQVVSGERGELVTFLAIVNGQGGTIPPVYVYPRVRDPEQYFGDDGPEGSLVLGNKSGWMNSELFMSVLKHIANHTKCSVENRILLILDNHKSHISIEGIQFCREKGISLLSFPPHTTHRLQPLDVGLYAPFKNALSIAYNDWMLSHPGRPITIRNIASLSCIAYKEAFTLNNITSSFKKPGIWPVNRLAFTDNDFIASSVTNVKKTDNHKRDHLVGETDTSEEVQKDNNINLEEEETDINEEQVETNKQEEVEKNTKGDKPSSSKVYKNLDITPPSQLTNNTSLTDIRPLPKFVGERKKKNNRKYESKSRVYTFTPEYKELENEIKRKREIEIKKNNKKTKRCVFKEINYNDWDTDLSVTFASSGDESSHECDEEFLKMGIDRNPVKGEFVLVRFYKNKKAIYYVAEVLNIDNNDFEVKFYRKSLKKDHCFVKPTVDDISTISESDIRIILPNPVHMGATKRQNAFINFGLTFNSINIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -