Bgla007607.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294045.1:1602378-1610464[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.015 0.88 11.1 4.9 1 23 4 27 4 27 0.95 2 21 0.88 50 5.5 0.1 2 23 31 51 30 51 0.92 3 21 0.00011 0.0062 17.8 2.8 1 23 57 80 57 80 0.96 4 21 0.61 35 6.1 0.6 3 23 87 106 86 106 0.95 5 21 0.00069 0.039 15.3 0.7 2 23 113 134 112 134 0.96 6 21 7.7e-07 4.4e-05 24.6 1.5 1 23 140 162 140 162 0.97 7 21 0.15 8.5 8.0 1.0 1 13 168 180 168 181 0.93 8 21 0.028 1.6 10.3 0.2 2 20 190 208 189 210 0.92 9 21 0.007 0.4 12.2 0.8 1 21 273 293 273 296 0.90 10 21 0.57 33 6.1 1.0 2 23 300 320 299 320 0.95 11 21 0.00087 0.049 15.0 0.8 3 23 328 349 327 349 0.97 12 21 5.4e-05 0.0031 18.8 2.3 1 23 380 402 380 402 0.97 13 21 6.3e-06 0.00036 21.7 1.9 1 23 408 430 408 430 0.97 14 21 0.0061 0.35 12.3 1.5 1 20 436 455 436 456 0.94 15 21 0.027 1.6 10.3 0.3 2 21 463 482 462 483 0.94 16 21 0.37 21 6.7 0.3 2 23 573 593 572 593 0.96 17 21 0.01 0.59 11.6 5.4 1 23 598 620 598 620 0.96 18 21 0.9 51 5.5 0.4 3 23 625 643 624 643 0.92 19 21 5.7e-05 0.0032 18.7 1.8 1 23 649 671 649 671 0.97 20 21 3.5e-07 2e-05 25.7 1.0 1 23 677 699 677 699 0.98 21 21 0.00072 0.041 15.3 1.4 1 23 705 727 705 727 0.95
Sequence Information
- Coding Sequence
- ATGAAAGAGTATCAGTGTCAGATATGCAAGAAAAGCTTTTGTCTTTACAAAGACATGGAGCACCATAAAGAAATCGAACACGGAACCATATCCTGCgaaatatgtcaaaaagtcaTAAAACGAGGCAGTATCCGAGCTCACCTTCAAATCCACACCACAGAAATGCCTTTTGTTTGTTCCACATGTGGTCAAGCGTTCAAAACTCGAGGATCTCTCTATAACCACACTAGACACACTCATGGGAGTTTAATGGAGATTTGCGATATATGTGGTGTTGAGGTTAAAAAGAGATACTTTAAAAATCATCAGCTTAAACATACTGATGAAAGAAAATGGGAATGTGATATCTGTAATTCTACTTTCAAGTACAATCAGTCATTGATGAAACATAAGTTAGTTCACAGTAACGATGCTCAGCATGTTTGTGATGTGTGTAATAAGGCTTTTAAAAGGGCCGACAATTTAAGGGTCCACAAACGGTCTCATCAGGATGTTAAACCTTTCAGCTGTGATCTCTGCAATAGGACCTTTACAACAAAGCAGATTATACTGAAtcaggaaattttaaattgtccaACCTGTGGCAGCTTTTTTTCCAACATTGAGGAATTAAAAAGCCATTTTAACAACTACGAtgaatgtttacaaaaattcgTCGACAATTATTTCCTCGACATCCAGATCAGTGACGATTTTGCCGAAAACATAAACTGTTCGTTTTGTGGTTTGGACATCTTCAGCAAAGATTTTCTTAAACACGTCGAAGATCATGGTGTGCCAAACTCatcaaaacatgtaaaaataagaaGAATTCTCTTCACTTGTAATATTTGCAAAGAAACGTTCGAAACTGGTGAAGAAATGCAAAAGCACAAAGATTTTTTGCACATTGTTTTAGTTTGTAAGTATTGTAAAGCAAGGGTTAAAAAGAACGACTACAAAGATCATATTAAATCTCACGAAGCTGACAGTGAACCGTTGTGTAAAATATGCAATATAAAGTTCAACTCGAAAGAAGCCTTGATGGTTCACAAACGACAGAACCACTACAACATGACCACAAAAGTTTGTGATATCTGCGGTCTAGCTGTCAAAAAGCTTCAAAGACACAGAGCCCGACATTTTAACGTTAGGAACTATAAGTGTGACAAGTGCACTTTATCGTTCAAGGACAATTACACGCTTACAAAGCACTCATTGGTTCACAGCGATGAGGCTAATTATGTTTGTGATGTTTGTAATAAAGCGTTTAAGAGGGCTGACCATTTGAAGGTGCACAAGTTTAGCCATGAAGTTGTGAAGCCATATGCTTGTGAATATTGTTCTAGAACTTTTACCACAAAACAGTCGAGGAATAATCATCGAACGTTCGACGCTGCCAACATAACGTGCAAAATGTgtgataataaatttaaaacaatggaCGAATTCAACGGACATATTAAGGAAACGGAGTCTGATAAATATTGCAGGTGCTGCGGATTAGAATTAACAAAAACCCATTTAAAAAAGCATTatcataaaataaagaaaaaagtgtTAGCATCAAAAAATAATCCTTTACGAATAAAAgtgaaaaaagaaagaaaagagAAACAAGACAAAGCCAACAAACTTCCATTCATTTGTGCGGACTGTATGTTGGAatttaaatcctttaaaaaatatataatgcattttaaaaatgaacaCCAGTCCGTACCAGCGGACGCCATACGATGCGAGATTTGCTACAAAATTTTAACTGCGTCCGGTTACTCGAAACATTTAAAACTCCACGAGGACAAAAATCACCATTGCAACGAGTGTGGTGAGTCATTTCACACTGTAAGAAATCTAGACAGACATAAAATATCACACGGAAGGGGAATGTGCGAAATCTGCGGACTCGTTTTAAGAAGTTCAATGAAGAACCACATGATGAATCACATGAACGAAAGAAACTTTAAATGCGACCAGTGTAGTAAGAGCTTTAATACAGACAGTCAGTTGTCAAAACACAGAGTTGTACACGAAAAAGAAGCGAAATATATTTGTGACGTTTGTAGTAAATCCTTTAAAAGGTCGGATAATCTAAGAGTTCACAAACGAATCCACGAATACATAAAACCGTTTACTTGTGAATATTGCCCGAAAACATTCACAACGAAGCAGTGGAGGGATTCTCATTTAGATTCACATTTTTAA
- Protein Sequence
- MKEYQCQICKKSFCLYKDMEHHKEIEHGTISCEICQKVIKRGSIRAHLQIHTTEMPFVCSTCGQAFKTRGSLYNHTRHTHGSLMEICDICGVEVKKRYFKNHQLKHTDERKWECDICNSTFKYNQSLMKHKLVHSNDAQHVCDVCNKAFKRADNLRVHKRSHQDVKPFSCDLCNRTFTTKQIILNQEILNCPTCGSFFSNIEELKSHFNNYDECLQKFVDNYFLDIQISDDFAENINCSFCGLDIFSKDFLKHVEDHGVPNSSKHVKIRRILFTCNICKETFETGEEMQKHKDFLHIVLVCKYCKARVKKNDYKDHIKSHEADSEPLCKICNIKFNSKEALMVHKRQNHYNMTTKVCDICGLAVKKLQRHRARHFNVRNYKCDKCTLSFKDNYTLTKHSLVHSDEANYVCDVCNKAFKRADHLKVHKFSHEVVKPYACEYCSRTFTTKQSRNNHRTFDAANITCKMCDNKFKTMDEFNGHIKETESDKYCRCCGLELTKTHLKKHYHKIKKKVLASKNNPLRIKVKKERKEKQDKANKLPFICADCMLEFKSFKKYIMHFKNEHQSVPADAIRCEICYKILTASGYSKHLKLHEDKNHHCNECGESFHTVRNLDRHKISHGRGMCEICGLVLRSSMKNHMMNHMNERNFKCDQCSKSFNTDSQLSKHRVVHEKEAKYICDVCSKSFKRSDNLRVHKRIHEYIKPFTCEYCPKTFTTKQWRDSHLDSHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -