Bgla024782.2
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- PZF1
- Assembly
- GCA_958510825.1
- Location
- OY294051.1:7627249-7630459[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0034 0.19 13.2 1.7 1 23 81 103 81 103 0.99 2 15 0.0012 0.067 14.6 0.9 2 23 109 130 108 130 0.97 3 15 0.0011 0.062 14.7 2.0 1 23 136 159 136 159 0.98 4 15 7.4e-05 0.0042 18.4 0.2 1 23 165 187 165 187 0.96 5 15 0.016 0.93 11.0 6.0 1 23 194 216 194 217 0.95 6 15 0.0028 0.16 13.4 0.7 2 23 225 246 224 246 0.96 7 15 0.0029 0.16 13.4 0.4 1 23 251 274 251 274 0.95 8 15 0.0012 0.071 14.5 4.2 3 23 279 299 277 299 0.95 9 15 0.00017 0.0097 17.2 2.1 2 23 307 329 306 329 0.95 10 15 6.5e-06 0.00037 21.7 1.2 2 23 337 358 336 358 0.98 11 15 2.2e-05 0.0012 20.1 0.2 2 23 363 384 362 384 0.96 12 15 2.5e-05 0.0014 19.8 0.9 1 23 390 412 390 412 0.97 13 15 5.8e-05 0.0033 18.7 2.4 1 23 418 440 418 440 0.96 14 15 0.02 1.1 10.7 1.2 1 23 446 468 446 468 0.98 15 15 0.0032 0.18 13.2 3.0 1 21 474 494 474 498 0.89
Sequence Information
- Coding Sequence
- atggaaaataatatattaaaccttAAACAAGAATTTGGGATTAATTCAAGTCAAGAGTCCagcaaaaactttgttaatattaaagaagAGTCAAGCAAAAACTTTGTCAGTTTTAAAGAAGAGTCAagcaaaaactttgtttataTTAAAGAAGAAATCCTTGATATCGCAGAAGTAAATATATCCCCACCCAAAAATGAATTTGGcaccaattttttaattatcaataACACAGTAATCTACAAATGTGAGGTCTGTGAAATAGAACTACGTCATTCTCAAGACTATAAAGATCATCAAAAAATGCACAATATTAAAAGCAAAACTTGCCCTATATGTAATATAGtttgccaaaatttaagtaaGCTAAAAGAACATATAAGCATCCATTTGGGCAAAAAAGAATATAAGTGTGAGATATGtgacaaaagatttttattaaaatattatgtcaAATCGCATATGAAAAGAGTACATAGCGAAGAGAAACAATTCAAATGCGACAAATGTGATGAGGCTTTTAGAGATTTAGGTGGTTTAAGAAACCATAATTTAATACATATGAAAAATATAGAGGATTTTGTTTGTAAAagTTGCGGACAAGACTGCAAGCATCCGTTGGCGTTTCAAAGACACATGCAAAATCATCACACTGCTGAACATGGACCTCTAAATTGTGGagtttgcaataaaaaattcgATACCGACCGTGTATTGCAAATGCACCTAAAAACTCATTCCGAACTGACGTATCCCTGCGAATATTGCATGAAAATCTTCCCAACGATGTACAAACTTAACAAACATTTAGGGAGAGCCCATGTACCTAGTTGTTGTGAAAAATGCAATACGTTTTTTTACAACAGAGCAGAATTTACTAAACACATGAAGGGTCACGAACAAGAAAACGCAAATCTTTCTTGTCTGCATTGTAATAGAATGTTTAACAAGCCCAAAAATTTAAGTGAACACATTAGACTGCAGCATACTAGTAACGGAAAGTTAAATCAGTGCCGTATTTGTGAAAAGAAATTTATAAATGAATCGTTGTTGAAAAACCATATTAAGACTCATAGGAAGTGCATTAAATGTGATGTCTGCGGTAGTTCATTTAGTAgtgtatataatttaaaaacgcaTATGGTCGTTCATACTAAAGAGCGCAACTTTATATGTGATACATGCCAGAAATCTTTTACCTCAAAGCAAACATTAACTATTCACGTTGGTACACATCGTAAGATTCGTGCATTTTCTTGCGATAAGTGCGGtaaatcatttaaaacaaaCACTAGGTTATACGCTCATAAATTAAATCACAGATCTGAGCTAAAATTCCAGTGTGATTTATGTCCGTCCAAGTTTAATCTTAAACAACGTTTAAAACTTCACATGGTAAGACATTCCAAGCTAAAACCATTCATTTGTTATGTTTGtgaaaagaaatttaaacataagcgaacattattaaaacattctattagAACGGGCCACAAACTAGAAAAAGTTAAACAATTGGAAGATAATTTCATGATTAAAGAAGAAATTTTAGATGATGACCATCAAAGGGGAATATTCTAA
- Protein Sequence
- MENNILNLKQEFGINSSQESSKNFVNIKEESSKNFVSFKEESSKNFVYIKEEILDIAEVNISPPKNEFGTNFLIINNTVIYKCEVCEIELRHSQDYKDHQKMHNIKSKTCPICNIVCQNLSKLKEHISIHLGKKEYKCEICDKRFLLKYYVKSHMKRVHSEEKQFKCDKCDEAFRDLGGLRNHNLIHMKNIEDFVCKSCGQDCKHPLAFQRHMQNHHTAEHGPLNCGVCNKKFDTDRVLQMHLKTHSELTYPCEYCMKIFPTMYKLNKHLGRAHVPSCCEKCNTFFYNRAEFTKHMKGHEQENANLSCLHCNRMFNKPKNLSEHIRLQHTSNGKLNQCRICEKKFINESLLKNHIKTHRKCIKCDVCGSSFSSVYNLKTHMVVHTKERNFICDTCQKSFTSKQTLTIHVGTHRKIRAFSCDKCGKSFKTNTRLYAHKLNHRSELKFQCDLCPSKFNLKQRLKLHMVRHSKLKPFICYVCEKKFKHKRTLLKHSIRTGHKLEKVKQLEDNFMIKEEILDDDHQRGIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -