Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:6436901-6438499[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.5e-05 0.0026 19.0 2.1 3 23 125 145 123 145 0.96

2 12 0.00082 0.047 15.1 5.1 2 23 152 173 151 173 0.96

3 12 0.018 1 10.9 2.2 3 23 259 276 258 276 0.95

4 12 0.0012 0.067 14.6 1.1 1 23 282 305 282 305 0.97

5 12 2.9e-06 0.00016 22.8 6.0 1 23 310 332 310 332 0.99

6 12 0.0001 0.0058 17.9 5.8 1 23 338 360 338 360 0.96

7 12 0.0017 0.098 14.1 0.3 3 23 370 390 369 390 0.98

8 12 8.7e-06 0.0005 21.3 3.5 1 23 396 418 396 418 0.97

9 12 6.4e-06 0.00037 21.7 0.8 1 23 424 447 424 447 0.97

10 12 6.1e-05 0.0035 18.6 2.9 1 23 453 475 453 475 0.96

11 12 8.8e-08 5e-06 27.6 1.6 1 23 481 503 481 503 0.99

12 12 0.00015 0.0086 17.4 0.3 1 23 509 531 509 531 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.5e-05	0.0026	19.0	2.1	3	23	125	145	123	145	0.96
2	12	0.00082	0.047	15.1	5.1	2	23	152	173	151	173	0.96
3	12	0.018	1	10.9	2.2	3	23	259	276	258	276	0.95
4	12	0.0012	0.067	14.6	1.1	1	23	282	305	282	305	0.97
5	12	2.9e-06	0.00016	22.8	6.0	1	23	310	332	310	332	0.99
6	12	0.0001	0.0058	17.9	5.8	1	23	338	360	338	360	0.96
7	12	0.0017	0.098	14.1	0.3	3	23	370	390	369	390	0.98
8	12	8.7e-06	0.0005	21.3	3.5	1	23	396	418	396	418	0.97
9	12	6.4e-06	0.00037	21.7	0.8	1	23	424	447	424	447	0.97
10	12	6.1e-05	0.0035	18.6	2.9	1	23	453	475	453	475	0.96
11	12	8.8e-08	5e-06	27.6	1.6	1	23	481	503	481	503	0.99
12	12	0.00015	0.0086	17.4	0.3	1	23	509	531	509	531	0.94

Sequence Information

Coding Sequence: atgaaaatagaGCATCATGAGCTCAACCTCTGTGAGAATCAGcttaaaaatgaattaaaagaaGAAGAGATTGTTTCTTCGAACGAAGATGTGAAAATTGAAGTTGAAGAGCACAATTTTACAGATGAAATCAGGAACATAAAAGAGGAACCGTCTGATgaagaagaattaaaaaaagatgaaGAAATATCGAacgaaaatgtaaaaattgagGACTGCAGTATTGATGACATTAATAACATACACGGGAAACTCACTGACACAGAAGTTAAAAAAGAAGTCAGTGATAAAATACCAGACCGAAATCCTTGTGAAAAGTATATTGCAAGTTCATCGGACACAATTACGGATGGTAGGGAAAAGCTTACTAACTGTAAATATTGCAACAAAATCTATACAAACccattacatttaaaaactcaCATCCAAATCCACACTGACGAGAAACCTTTGCCCTGTCATCACTGTGATCAATCTTTTACCAGCGGATATTTTTTGACGCATCATTTAATTACTCACAAAGATgtgaaaattaaagttaaagagCAAAATATTATTGATAAAACCAACAAcataaaagaagaagaaatatcTAATGAAGAAGTAACAATTGAAGATAGCAGTGTTGATGACACCAATAATATAAAAGAGGAATTAAATgatacagaaataaaaaataaagtcaatgATGAAATATCCGACCAAAATCcttgtaataaatatattgcGACTTCATCAAACTCTGTCATGCATGCTAAGGAAAGGCTTAACTTCTGTAAATATTGCAACAAATCCTATAAGAATTTAAAAGTTCATATGAATGTCCATCCTGACCAGAAGTCATATGCCTGCTCTAGTTGTGAAAAATCATACCGTCTCGCAGAAGAGTTAGAAAGCCACATTAAGCGTTGCCATTCGGGAGTCACATATCCATGCAGTTACTGCcagaaaaaatttaagaaatcgTCACACTTGACATACCACCTTCGAACTCATACTGGTGAAAAACCCTATTGCTGCTTGATTTGCCAGAAATCATTTTCACACCCTTCCACTTTGTCAAGACATAGCCGCCAACATGATGAGATTCAAGATAAACCTCACGGTTGTGTTGAATGCGAAGCACGTTTTTCTTCTGATTACGGATTAAAAAGGCATATGTTTACTCATTCAGGAGTGAAGCCGCATTCTTGCACGTATTGCGAAAAAGCGTTTTCTGAGAAGACAACCTTGAAAAAGCACTTACGCGTACACACCGGTGAAAAACCCTATCCTTGCAGTTACTGTCAAAAACCATTCAGACATTCGGCTGGTCTACGTTTGCATATACAAAGTATACATACAGGAATCAAGCCACATGTGTGCAGTTATTGTCAAAAGGCTTTCACTAGTACAGGGGACctaaaaaaacacgtttttaaaCACACGGGAGAACGACCGTATAAATGTTCTTCATGTCCGAAGACTTTTTCGGATAAATCCAATTTGAGAATTCATACGCGGATACACACTCAAGAAAAACCGTATTCGTGTATTCTGTGCAATAAATCTTTCATTAACGCATCCGGTCTAAACAAACACATTGTCAGACATGATTAG
Protein Sequence: MKIEHHELNLCENQLKNELKEEEIVSSNEDVKIEVEEHNFTDEIRNIKEEPSDEEELKKDEEISNENVKIEDCSIDDINNIHGKLTDTEVKKEVSDKIPDRNPCEKYIASSSDTITDGREKLTNCKYCNKIYTNPLHLKTHIQIHTDEKPLPCHHCDQSFTSGYFLTHHLITHKDVKIKVKEQNIIDKTNNIKEEEISNEEVTIEDSSVDDTNNIKEELNDTEIKNKVNDEISDQNPCNKYIATSSNSVMHAKERLNFCKYCNKSYKNLKVHMNVHPDQKSYACSSCEKSYRLAEELESHIKRCHSGVTYPCSYCQKKFKKSSHLTYHLRTHTGEKPYCCLICQKSFSHPSTLSRHSRQHDEIQDKPHGCVECEARFSSDYGLKRHMFTHSGVKPHSCTYCEKAFSEKTTLKKHLRVHTGEKPYPCSYCQKPFRHSAGLRLHIQSIHTGIKPHVCSYCQKAFTSTGDLKKHVFKHTGERPYKCSSCPKTFSDKSNLRIHTRIHTQEKPYSCILCNKSFINASGLNKHIVRHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -