Bgla029602.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294053.1:11628495-11629694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.6e-06 0.00032 21.9 1.9 2 23 92 113 91 113 0.96 2 11 0.00026 0.015 16.6 1.1 1 23 119 141 119 141 0.98 3 11 0.00017 0.0099 17.2 5.4 1 20 147 166 147 169 0.92 4 11 1.6e-06 9e-05 23.6 2.0 1 23 175 197 175 197 0.98 5 11 0.021 1.2 10.7 4.4 1 23 203 225 203 225 0.98 6 11 1.9e-06 0.00011 23.3 0.5 1 23 231 254 231 254 0.96 7 11 9.1e-08 5.2e-06 27.5 2.7 1 23 260 282 260 282 0.98 8 11 8.2e-06 0.00046 21.4 0.9 1 23 288 310 288 310 0.98 9 11 7.7e-07 4.4e-05 24.6 0.9 1 23 316 338 316 338 0.98 10 11 0.0016 0.091 14.2 5.9 2 23 344 365 343 365 0.95 11 11 7.9e-08 4.5e-06 27.7 1.6 1 23 371 393 371 393 0.98
Sequence Information
- Coding Sequence
- atggaaaatgtAACAATTAAAATAGAAGATGATAGTGATCAAGATGAGATTGTCCATTTAACTATAGAAGATTTTATTCAACAACGCATTAAAAATGAGGACGAAAATTATTCGGATGAGGTGAAACAAGAACTTTACATTCCactggtaaatttaaaaattgaattaaagaaaattgatattGATAAAGGGAATGAAGAAACAGAGGAAGAAACACAGgataaagaaaaaagaaagaaGAAAAGGGGCAGCAAATCAAAAAATCAGTCATGCATCTGTGCATATTGCGATAAAATATTTCGTCTAAAAAGTTCTTTAAGAAGACATATAAATATTCATCTTGGAAAAAATCCGTATAGTTGCTCACTATGCAGCAAAACATACGTAAATGGCACGGGACTAAAAACACATATGTATACTCACAGTGGAAATAAACCTTTTTCATGTAGCTATTGCGATAAAACATTTTACCAGAAACACCACCTATCTAGTCATTTACCGATGCACACTggtaaaaaaacacataaatgtAACCAGTGTGAAAAATCTTTTGCAGTTCTTTCGTCTCTAAAAGACCATATACGCACACATGATGGTTATAAGCGTTATATGTGTCAAACGTGCGGTGCTCTTTTGTCATGTAGTTCCCATTTAAAACGACATCTTCGTACGCATACCGGCGAAAAACCTTACGCCTGTCCAACCTGTGGAACTGCATTTACTGCCTCAAAACATTTGAAGAGACACATCCGTGCGTTACAcagtaatgaaaaaaattttgtctgCTCGCactgtaataaaaaatttgcGGACAATGGAGATTTAAAGAGGCATCTTCGCACGCACACTGGGGAGAAACCCTACAAATGCACGCACTGCGGTGCGTCGTTTGCAGTgcggataaatttaaaaacgcaTATTTATGTGCATACGGGTGAGAGACCGTTTGAATGTGATTTGTGCGACAAAAAGTTTACGCAAAAAAGTGGTTTGACCACTCATTTAGTTACACACAGTACTGAAGATTGTCATTGTTCATATTGCGATGAAACATTTTCGAGCATATACAGGTTAAGAATTCATAAACGTACGCATACGGGAGGGAAAACACATACTTGCCCAGAGTGTAACAAAAGTTTTCCAGAAAAAAGTAGTTTAACTAGACATTTGCGTATACATAAACCAAAGAGTGCTacataa
- Protein Sequence
- MENVTIKIEDDSDQDEIVHLTIEDFIQQRIKNEDENYSDEVKQELYIPLVNLKIELKKIDIDKGNEETEEETQDKEKRKKKRGSKSKNQSCICAYCDKIFRLKSSLRRHINIHLGKNPYSCSLCSKTYVNGTGLKTHMYTHSGNKPFSCSYCDKTFYQKHHLSSHLPMHTGKKTHKCNQCEKSFAVLSSLKDHIRTHDGYKRYMCQTCGALLSCSSHLKRHLRTHTGEKPYACPTCGTAFTASKHLKRHIRALHSNEKNFVCSHCNKKFADNGDLKRHLRTHTGEKPYKCTHCGASFAVRINLKTHIYVHTGERPFECDLCDKKFTQKSGLTTHLVTHSTEDCHCSYCDETFSSIYRLRIHKRTHTGGKTHTCPECNKSFPEKSSLTRHLRIHKPKSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -