Bgla030274.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294053.1:26160976-26167932[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.087 14.2 2.6 1 23 167 189 167 189 0.95 2 13 1.8e-05 0.001 20.3 1.4 1 23 195 217 195 217 0.98 3 13 0.00035 0.02 16.2 1.9 1 23 223 245 223 245 0.97 4 13 6.3e-06 0.00036 21.7 0.9 3 23 253 273 252 273 0.95 5 13 0.00056 0.032 15.6 4.7 1 23 279 301 279 301 0.98 6 13 8.1e-05 0.0046 18.2 0.8 1 23 307 329 307 329 0.96 7 13 0.00086 0.049 15.0 4.2 1 23 418 440 418 440 0.98 8 13 0.00022 0.013 16.9 2.4 3 23 448 468 446 468 0.98 9 13 5.8e-05 0.0033 18.7 1.0 1 23 474 496 474 496 0.98 10 13 4.9e-07 2.8e-05 25.2 1.2 1 23 502 524 502 524 0.98 11 13 2.7e-06 0.00015 22.9 2.2 1 23 530 553 530 553 0.97 12 13 0.00012 0.0069 17.7 1.8 1 23 559 581 559 581 0.96 13 13 5.6e-05 0.0032 18.8 1.9 1 23 587 609 587 609 0.99
Sequence Information
- Coding Sequence
- atgACCGAGTATctagattttgataaaatatgcagaatatgtttaaataaaagccCCACTATCGATTTAAATGTAAAACCGAAGAATTTCGATGTCAGTTACTACATGTTATTGAAATCTTGTGCGTCAGTACaggctGAAATAAACGATTGTTTGCCGACTAAGATATGTAAAATATGCGAAAAAGTGTtagtaatatattataattttcgaAATTCAACACAGGAAAATGATTTGAAGTTAAGAGAAATACTTGAACTGAGAAACAAAACTGAATTAAAAGATACACCTATAAAATTAGAAGAAATCCAGATTAaagttgaaaattattttattgatgAAAATGGagaaaatatagaaaatgaTGATGCAAGTATATCCTGTGATGATATACCTTTGATCAAATTAGAAACTGATGTAAAGAACATATctaaaataaccaaaataaaaagaaaaatcaaagAACATGCAAGTGAAAATGAAAAAGAACAAATTATACATGCTTGCAGGAGCtgtgaaaaaatattcaaagaTGTGTCAGAATTAAAAGCACATCACTTGACGCATACAGATGAAAAGACTTTTTCTTGTGAATTATgtggaaaacttttaaaaaccaAGTCCAatttaaaagaacatttaaaacgACATGcaggtgaTAAAAAATTCGAATGCAATGTTTGCCAAAAGAAATTTTTACGCCAGTCGTATTTAAACAAACACAACATGGTTCACACAGGGGAAAAACCAAACATGTGTAGTACTTGTGGAAAGTCATTTATATCGTcttcaaatttaataaaacacaaaGTGTCTCATTCTGAAGAAAGACACTTCGAGTGTAACATGTGcccgaaaaaatttaaatgcaaaGTCAATTTAACCGATCACAAAAGAACGCATACAGGAGAAAGGCCGTATCTGTGCACGACGTGCGGGAAATCGTTTGCGCAACTGTCGTACTATTTGGTGCACAAAAAAATTCATCTGGTTATAGAAAATGATGAAAAATTGAGAGCAATAGTAAATTCAAGGGAAAACAATGTTTCACAAGATATTCCTGTAAAAACTGAAGAAATTCTTGACATAAAAGTAGAAAATACATTAGAAAATGAAGAGCAAGATCAAGAATTTGCCAACCTGGTAGAACAAGATAAATATATATCTGACGATGATATTCCTCTCGTTGACATAAAAGTTGAATGTGTCTTGGATACGCCAGctgagaaacaaaaaaaagttaagaaaacaTACCAGTGTAAAGTTTGTAGGAAAACATGTAAGAACAGTGTAAAGTTAACAGATCACGAATCAACTCATTCTGAAGAGAAAGCCTTTGGCTGTGatttatgtgaaaaaaagtttaaaagaaaAGACACTTTGATGGACCATAAAAAACGTCATAATGgcGAGCGAAAGTTTGAATGTGATGTATGCAAGAAAACCTTTCTCCGACAATCTTACCTAAAGGAACACGCCAGGATCCACACAGGCGAAAAACCATACATGTGCTCCAGTTGCGGAAAGGCGTTTTCCAACTCTTCAGGACTCATGAAACATAGAAAAACGCATTCCGAAGAAACTCCTTTTAAATGTGAAGTTTGCCAGAAAAGATTCAAGCAGCAGAAGAATTTGCGCGATCACGTTCAGTCTATGCACACGGGACTTAGACCCTATTTGTGTAACGTGTGCGGAAAATCGTTCGCCCACCGCCAGTATTACATTGTGCACAAGAAAATCCATTTGGGGATATACGCGTACCCGTGCGAAATATGCGGGCAAAGGACTATTTGTAAAAGTGACCTTAAGAAGCATATGAGAACACATAATGtagcaaattttgaaaaatgttaa
- Protein Sequence
- MTEYLDFDKICRICLNKSPTIDLNVKPKNFDVSYYMLLKSCASVQAEINDCLPTKICKICEKVLVIYYNFRNSTQENDLKLREILELRNKTELKDTPIKLEEIQIKVENYFIDENGENIENDDASISCDDIPLIKLETDVKNISKITKIKRKIKEHASENEKEQIIHACRSCEKIFKDVSELKAHHLTHTDEKTFSCELCGKLLKTKSNLKEHLKRHAGDKKFECNVCQKKFLRQSYLNKHNMVHTGEKPNMCSTCGKSFISSSNLIKHKVSHSEERHFECNMCPKKFKCKVNLTDHKRTHTGERPYLCTTCGKSFAQLSYYLVHKKIHLVIENDEKLRAIVNSRENNVSQDIPVKTEEILDIKVENTLENEEQDQEFANLVEQDKYISDDDIPLVDIKVECVLDTPAEKQKKVKKTYQCKVCRKTCKNSVKLTDHESTHSEEKAFGCDLCEKKFKRKDTLMDHKKRHNGERKFECDVCKKTFLRQSYLKEHARIHTGEKPYMCSSCGKAFSNSSGLMKHRKTHSEETPFKCEVCQKRFKQQKNLRDHVQSMHTGLRPYLCNVCGKSFAHRQYYIVHKKIHLGIYAYPCEICGQRTICKSDLKKHMRTHNVANFEKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -