Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:534787-537903[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.6e-05 0.0009 20.5 4.0 1 23 101 123 101 123 0.98

2 14 4e-05 0.0022 19.2 7.5 1 23 129 151 129 151 0.98

3 14 0.38 21 6.7 2.2 1 12 157 168 157 169 0.92

4 14 2e-05 0.0012 20.1 4.2 1 23 279 302 279 302 0.92

5 14 0.00013 0.0073 17.6 0.4 1 23 310 332 310 332 0.96

6 14 0.0006 0.034 15.5 6.0 1 23 337 359 337 359 0.98

7 14 0.0021 0.12 13.8 0.4 1 23 365 387 365 387 0.98

8 14 9.9e-07 5.6e-05 24.3 1.3 1 23 393 415 393 415 0.98

9 14 4.4e-07 2.5e-05 25.4 2.6 1 23 421 443 421 443 0.99

10 14 3.3e-06 0.00019 22.6 3.2 2 23 450 471 450 471 0.98

11 14 0.00064 0.036 15.4 3.9 1 23 477 499 477 499 0.98

12 14 3e-07 1.7e-05 25.9 2.1 1 23 505 527 505 527 0.99

13 14 2.6e-06 0.00015 22.9 4.8 1 23 533 555 533 555 0.98

14 14 3.9e-06 0.00022 22.4 4.7 1 23 561 583 561 583 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.6e-05	0.0009	20.5	4.0	1	23	101	123	101	123	0.98
2	14	4e-05	0.0022	19.2	7.5	1	23	129	151	129	151	0.98
3	14	0.38	21	6.7	2.2	1	12	157	168	157	169	0.92
4	14	2e-05	0.0012	20.1	4.2	1	23	279	302	279	302	0.92
5	14	0.00013	0.0073	17.6	0.4	1	23	310	332	310	332	0.96
6	14	0.0006	0.034	15.5	6.0	1	23	337	359	337	359	0.98
7	14	0.0021	0.12	13.8	0.4	1	23	365	387	365	387	0.98
8	14	9.9e-07	5.6e-05	24.3	1.3	1	23	393	415	393	415	0.98
9	14	4.4e-07	2.5e-05	25.4	2.6	1	23	421	443	421	443	0.99
10	14	3.3e-06	0.00019	22.6	3.2	2	23	450	471	450	471	0.98
11	14	0.00064	0.036	15.4	3.9	1	23	477	499	477	499	0.98
12	14	3e-07	1.7e-05	25.9	2.1	1	23	505	527	505	527	0.99
13	14	2.6e-06	0.00015	22.9	4.8	1	23	533	555	533	555	0.98
14	14	3.9e-06	0.00022	22.4	4.7	1	23	561	583	561	583	0.99

Sequence Information

Coding Sequence: ATGGAGACTGTTAATATAAAAACAGAGGAAGATACTGAGAttcaaatagataattttaaaacaataataaagaaAGAAACCATAAGTGAATTTTCTGATTCTGATGAGAATAAGATACTCCCAAAAGAAGAATTGTTTATCTTGGATGACgaacatattaaaaaagaaattgcgGAACAGGAAAACTGTAACaatgaactaaatattaaagaagaaatacaagaagaagaagaagaagaagaggaagaaaatgataataaattaaaacagcACATCCTTTTACATTCGGGAGAAAAGCTTCATAAATGTGAGCAGTGCGGTAAAACCTTGGTAACAGCTTCAAAGTTAAAAAGACATATTCACACGCACAGTGGGCTGAGACCGCATAAATGCACTCATTGTGAAATGTCTTTCACACGAGGTTCACACCTAAGAAGACACATTTTGACTCACACTGGGGAAAAACCCCATAAATGTACTCActgcaacaaatatttttcccAAGATGTTGTTAATATAAAGAAAGAGGAGGAGGAGGTTAACGAGGATCTTTCGGAAACCATTTTGAAGAGAAAACCTGTAGGTGAAgatttaagaataaaaatagaGTCAAATTTATGCGATAGCGACGTTTCTAATTTTGGTGAAAAAATGATATTTCCAaaagaagaattttttattctgaatgaagaacatattaaaaaagaaatcgcAGAACAAGAAAATTCTAATAAcgaactaaatattaaaaaagaaaatgaagaTCAGATTGTAAAGAAACTGATAGAAGAAAATATAGAGGAAAATCCAATTCAAATATGCAGTGGAGAGTTGTTTTGTTGCTCCTATTGTAAGAAAAGCTTCTCGAGAAAAAGTGTTTTAAAACGACATATTGTAAATATACACATGAACAAGAAAccctataaacatatatgtgCTGAGTGCGAAAAACCTTTTACAGAAGCTAGTAAGTTAGAAACACATATTTACACCCACAGAGGAAAACCCCATAAATGTACTTACtgtcaaaaatctttttcaGTGTATTCAAAGCAAAAAAGACATTTGCTAACACATAACGAGGAACTACCCTATAAGTGTGGGTACtgtgaaaaatcatttttagaaGCCTCAAGGCTAACATCACATCTCCTCGTACACACTATGGAAAAACCCTATAAGTGTATTGATTGTGAAAAATCATTTTCCCGGCCTAGTGGTCTAAGAAAACATACGCGCACGCACAGTGTGAATAAGCCCTATAAATGCGAGTactgtaaaaaatcatttaaggaCAATTCGAGGTTGTTACTTCATATCCGCACGCACACTGGGGAAAGACCCCGAAAATGTCCTCAttgtaaaaaatcttttacacaAGATGAGACCCTTCAAAGACATATTCTAACGCACACTGAGGAGACGCCGTATAGATGTGAGCATTGTGAAAAAACATGTTTGGACGCGTCAAGTTTAAGAAAACATCTCCGCGCGCACACTGGGGAAAGACCCTATAAATGTACTAATTGTGAAAAATCGTTTTCGGAGTCATCAAAGTTAAAAATTCATATTCGCACGCACACTGGGGAAAAACCCCATAAGTGTACCCAGTGTAATAAGTCTTTTTCGCAAGATGCAAACCTAAAAAGGCATATGTTCACGCACACGGGGGAAAGACCCTATAAATGCGAGCactgtgatacgtcattttacgAAGCTTCGAAGTTAAAAAGACATTATCGTACTCACAGAAGGTAG
Protein Sequence: METVNIKTEEDTEIQIDNFKTIIKKETISEFSDSDENKILPKEELFILDDEHIKKEIAEQENCNNELNIKEEIQEEEEEEEEENDNKLKQHILLHSGEKLHKCEQCGKTLVTASKLKRHIHTHSGLRPHKCTHCEMSFTRGSHLRRHILTHTGEKPHKCTHCNKYFSQDVVNIKKEEEEVNEDLSETILKRKPVGEDLRIKIESNLCDSDVSNFGEKMIFPKEEFFILNEEHIKKEIAEQENSNNELNIKKENEDQIVKKLIEENIEENPIQICSGELFCCSYCKKSFSRKSVLKRHIVNIHMNKKPYKHICAECEKPFTEASKLETHIYTHRGKPHKCTYCQKSFSVYSKQKRHLLTHNEELPYKCGYCEKSFLEASRLTSHLLVHTMEKPYKCIDCEKSFSRPSGLRKHTRTHSVNKPYKCEYCKKSFKDNSRLLLHIRTHTGERPRKCPHCKKSFTQDETLQRHILTHTEETPYRCEHCEKTCLDASSLRKHLRAHTGERPYKCTNCEKSFSESSKLKIHIRTHTGEKPHKCTQCNKSFSQDANLKRHMFTHTGERPYKCEHCDTSFYEASKLKRHYRTHRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -