Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294046.1:13721304-13723181[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00021 0.012 16.9 2.2 1 23 100 122 100 122 0.98

2 17 5.6e-05 0.0032 18.8 1.7 2 23 179 200 178 200 0.97

3 17 4.7e-05 0.0027 19.0 0.9 1 23 206 228 206 228 0.99

4 17 0.00027 0.016 16.6 2.0 1 23 234 256 234 256 0.97

5 17 3e-06 0.00017 22.7 3.0 3 23 264 284 262 284 0.96

6 17 3.3e-06 0.00019 22.6 1.9 1 23 290 312 290 312 0.99

7 17 2.3e-06 0.00013 23.1 1.6 1 23 318 340 318 340 0.98

8 17 9.8e-06 0.00056 21.1 0.7 1 23 348 372 348 372 0.94

9 17 0.0017 0.094 14.1 5.7 1 23 379 401 379 401 0.97

10 17 1e-05 0.00057 21.1 0.5 1 23 407 429 407 429 0.98

11 17 0.0035 0.2 13.1 1.0 6 23 438 455 433 455 0.93

12 17 6.7e-05 0.0038 18.5 3.7 1 23 461 483 461 483 0.99

13 17 0.0095 0.54 11.7 3.8 3 23 490 510 489 510 0.98

14 17 0.0073 0.42 12.1 2.9 1 23 515 537 515 537 0.99

15 17 0.003 0.17 13.3 1.9 1 23 543 565 543 565 0.99

16 17 0.0011 0.063 14.7 4.9 1 23 571 593 571 593 0.98

17 17 0.67 38 5.9 4.6 1 21 599 619 599 620 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00021	0.012	16.9	2.2	1	23	100	122	100	122	0.98
2	17	5.6e-05	0.0032	18.8	1.7	2	23	179	200	178	200	0.97
3	17	4.7e-05	0.0027	19.0	0.9	1	23	206	228	206	228	0.99
4	17	0.00027	0.016	16.6	2.0	1	23	234	256	234	256	0.97
5	17	3e-06	0.00017	22.7	3.0	3	23	264	284	262	284	0.96
6	17	3.3e-06	0.00019	22.6	1.9	1	23	290	312	290	312	0.99
7	17	2.3e-06	0.00013	23.1	1.6	1	23	318	340	318	340	0.98
8	17	9.8e-06	0.00056	21.1	0.7	1	23	348	372	348	372	0.94
9	17	0.0017	0.094	14.1	5.7	1	23	379	401	379	401	0.97
10	17	1e-05	0.00057	21.1	0.5	1	23	407	429	407	429	0.98
11	17	0.0035	0.2	13.1	1.0	6	23	438	455	433	455	0.93
12	17	6.7e-05	0.0038	18.5	3.7	1	23	461	483	461	483	0.99
13	17	0.0095	0.54	11.7	3.8	3	23	490	510	489	510	0.98
14	17	0.0073	0.42	12.1	2.9	1	23	515	537	515	537	0.99
15	17	0.003	0.17	13.3	1.9	1	23	543	565	543	565	0.99
16	17	0.0011	0.063	14.7	4.9	1	23	571	593	571	593	0.98
17	17	0.67	38	5.9	4.6	1	21	599	619	599	620	0.94

Sequence Information

Coding Sequence: ATGGAACATTTATTTGAAGAAGATGATTATCCACTTTCACCACCAACCCTACAACCTTATTATATGGAAAACGCTTCTAAGGACAATTATCCCAATTTACTACCATGTTACAGAGATTTCAAAAATgacaataaaaatttagaaagaGAACGATCTCTTATGTTATCAGATGAAAAGCTATTCGTAAATAATAATGAAGAAAAATTAGTACAAAATAGAAGAACCGAAGATCAGATTAAATACGAAGAAGACCTTAGCCATTACGACGTCGatgttaaacaaaaaatgcaaatatgttACGTTTGTCAGTATTGTGACAAAGATTTTTCGGATGAAACTTGCTTCAATATTCACATTCTATACCACACTGATTCAAATCATTTACCAGATGAAAAACCGGTAATAAAGTTGGTTAAAAACGACATTGTAAAGATAAACAAAGAAGAGCAGGTTactaaatatgaaaataaatataaccaGCCTAATAATGTTACAAATATTAAAGATACAGTGGAACATACCAAAAAGAAGAAAGTTTGCGATTATTGCGATCGAAAATTCTGTGATGAAATTGCTTTAAATAATCACCTTAAAACACATACTGCACCTAAACCATATGAATGTAAACAATGTCTGGAAAGCTTCTCGTTAAAACAGGACTTAATTAAACATGTTCGAACCCATAAGGATGACAGGCCTCACGAATGTCCACAGTGTTTTACCCGATTTGTAAAAAGATCTTACTTACTGGTGCATATGAAAGGCCATGCTGGCGATAAAAAACACCTGTGTCCTTATTGTGATAAAAGGTTTGTTCAAAAGCATGGTTTAACAGTTCATATTCGCTCCCATTCAGGagaaaaaccttttaaatgtaCGGAATGTCAAAAAAGGTTTtctattagaaaaaatttagaagaacaTATCAGATCGCACACAGGAGAGCAACCCTTTGTTTGTCTTTATTGCCAGAGACGATTTTCTTTAAAGGGAAATTTGAACAGACATATTAGAAGTCATACCGGTCAACAGAAAAGACCGTATGAGTGTGAAAAATGCGATAAAAAGTTTGTAGGAAAATCTGAATTAGATAGACATCTTAAAACATTATCGCACACAGGATTAATAATGACTCATACATGCGAACTTTGCAATCAAAAGTTcaaacgaaaaatgtttttatttcgaCACCTTCTCAGGCATGCGATAAAGCTACCCTTTCAATGTTCAatttgtgataaaaagtttaaaatacaaTCTTTACTTGATGTCCATATGGGGACCCATACAAAACCTTTCAAATGCATACCTTGTAATAAAGGCTTTTCCAGTAAAACATTGCTAAAAAATCATCTAAGTATGCACACGGGAGAAAGATGCTTTAAGTGCAATGAGTGTGGAAATAAGTttataactaaaacttgtttatTAAGCCATATTAAAACTCACAAGGAAAAACAACATGGTTGTCCACAATGTGGTAAAAAGTTTATGAGAAAAGCACATCTAGACTGCCATATAAAAAGCCACACAAATGAACAGTATCAGTGTGCTCACTGTTTGAAAAAATTCAGACTAAAATCTATATTAATGGTGCATATCAAAAAACATCAAGGAGAAAAATTGTACGAATGTAAACAGTGCAAGcaagaatttttgcacatgggTAACTTGAAGATCCATCTTCGTGTTCACACAAAAGAAAAACCGTTTATGTGTTTGATATGCGATAAGCGATTTGGACATCAAAGTTGTTTGGTGAACCACAATAAGACCCATGTACAAAACAAAACATTCTGTTGTTCGCATTGTGACCAGAAGTTCTTAAAAGAATCTGATTTAAGTGACCATATTAAACATATTGGTTGGTGcaattga
Protein Sequence: MEHLFEEDDYPLSPPTLQPYYMENASKDNYPNLLPCYRDFKNDNKNLERERSLMLSDEKLFVNNNEEKLVQNRRTEDQIKYEEDLSHYDVDVKQKMQICYVCQYCDKDFSDETCFNIHILYHTDSNHLPDEKPVIKLVKNDIVKINKEEQVTKYENKYNQPNNVTNIKDTVEHTKKKKVCDYCDRKFCDEIALNNHLKTHTAPKPYECKQCLESFSLKQDLIKHVRTHKDDRPHECPQCFTRFVKRSYLLVHMKGHAGDKKHLCPYCDKRFVQKHGLTVHIRSHSGEKPFKCTECQKRFSIRKNLEEHIRSHTGEQPFVCLYCQRRFSLKGNLNRHIRSHTGQQKRPYECEKCDKKFVGKSELDRHLKTLSHTGLIMTHTCELCNQKFKRKMFLFRHLLRHAIKLPFQCSICDKKFKIQSLLDVHMGTHTKPFKCIPCNKGFSSKTLLKNHLSMHTGERCFKCNECGNKFITKTCLLSHIKTHKEKQHGCPQCGKKFMRKAHLDCHIKSHTNEQYQCAHCLKKFRLKSILMVHIKKHQGEKLYECKQCKQEFLHMGNLKIHLRVHTKEKPFMCLICDKRFGHQSCLVNHNKTHVQNKTFCCSHCDQKFLKESDLSDHIKHIGWCN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -