Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294048.1:43124911-43129576[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.9e-06 0.00034 21.8 1.0 1 23 246 268 246 268 0.98

2 15 0.00018 0.01 17.2 2.4 1 23 274 296 274 296 0.97

3 15 2.3e-06 0.00013 23.1 0.6 1 23 302 324 302 324 0.99

4 15 0.0016 0.088 14.2 1.1 1 23 330 353 330 353 0.90

5 15 0.00016 0.0092 17.3 5.2 1 23 358 380 358 380 0.98

6 15 4.7e-05 0.0027 19.0 1.2 1 23 386 408 386 408 0.97

7 15 0.015 0.83 11.1 0.7 1 23 414 436 414 436 0.98

8 15 4.6e-05 0.0026 19.0 2.8 1 23 442 464 442 464 0.96

9 15 0.032 1.8 10.1 0.3 1 23 470 492 470 492 0.97

10 15 2e-05 0.0011 20.2 1.4 1 23 498 520 498 520 0.98

11 15 1.9e-06 0.00011 23.4 1.6 1 23 526 548 526 548 0.98

12 15 4.7e-05 0.0027 19.0 1.2 1 23 554 576 554 576 0.98

13 15 3.5e-05 0.002 19.4 0.6 1 23 582 604 582 604 0.99

14 15 4.4e-05 0.0025 19.1 1.0 1 23 610 632 610 632 0.98

15 15 5.8e-07 3.3e-05 25.0 3.1 1 23 638 660 638 660 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.9e-06	0.00034	21.8	1.0	1	23	246	268	246	268	0.98
2	15	0.00018	0.01	17.2	2.4	1	23	274	296	274	296	0.97
3	15	2.3e-06	0.00013	23.1	0.6	1	23	302	324	302	324	0.99
4	15	0.0016	0.088	14.2	1.1	1	23	330	353	330	353	0.90
5	15	0.00016	0.0092	17.3	5.2	1	23	358	380	358	380	0.98
6	15	4.7e-05	0.0027	19.0	1.2	1	23	386	408	386	408	0.97
7	15	0.015	0.83	11.1	0.7	1	23	414	436	414	436	0.98
8	15	4.6e-05	0.0026	19.0	2.8	1	23	442	464	442	464	0.96
9	15	0.032	1.8	10.1	0.3	1	23	470	492	470	492	0.97
10	15	2e-05	0.0011	20.2	1.4	1	23	498	520	498	520	0.98
11	15	1.9e-06	0.00011	23.4	1.6	1	23	526	548	526	548	0.98
12	15	4.7e-05	0.0027	19.0	1.2	1	23	554	576	554	576	0.98
13	15	3.5e-05	0.002	19.4	0.6	1	23	582	604	582	604	0.99
14	15	4.4e-05	0.0025	19.1	1.0	1	23	610	632	610	632	0.98
15	15	5.8e-07	3.3e-05	25.0	3.1	1	23	638	660	638	660	0.99

Sequence Information

Coding Sequence: ATGGAAGTTAAAACCGAAAATATATCCCGTGaacattttaatgaaatttgtaGAACATGCTTTTCAAAAAGTGATTTGAAGCTAATTACTTCATTAGTGTACAATGAAGATAATTATAACATAAATGTTTCAGAATTGCTATTGGAATACTTAGGTCTTTGGATTGACGACAATGACAATTTTCCAAACAAAATTTGTGACAAATGCAAAACCATTTTAACgacattttacaaatttagcCGGGAATGTAGCGCAAAACAAAGTGTTTTAGAATACGAATTATCTAATGTAGAAACAGAAACAAGCGAGGaacatgtaaaaattaaaattgaaaaagaggAGGAGCCAGAAACTGAATGGACTGAATtgaataatccaaatttaagtGATACTAAATCCGAAAAGCATCCTCAAACATATGTTCCTGTTATACAGCCAAATTTAATTGAAGGTGAATCTTTGGAACAAACCTTTGAACACAATCCCATTGAAGGAACTAATTTTACTCATAAACTTGAATATGAGTACAATCCCGTGAAAAAGACTAATTTAAGTGATGATCTTGATCAGCCTTATGAGTGCAATGCGGCCGAAAAAATAAATGACGATCAACCTTATGAGCAGCCATACGACTACAATCCTGACATCGAAGTTAAAGTCGAGTTAGAAGAAAAATACGATGCTGACAAGGCAACTTTTTCCAATAAAGATgacaaaattattgtaaaaaaagtgttcaCGTGTGAAATCTGCGAAGAATCATTCGATACCAACTCGAAGTTACTAAGACATAATAGGACTCATAGTGGGGAGAAGCCGTTTTCGTGTACCGTCTGCCCAAAAGCGTTTTCGTTGAAGTGTAATTTATTGAGACACAATTTGACGCATACAGGTGAAAAACCGTTCAAATGTGAAGTTTGCGAAGCCTCTTTTTCAGTAAAATCGAATTTAATTAGACATAACCGTACACATACTGGCGAAAAACCGTTCTCCTGTATCATCTGTAAAAAATCATTCACCTACAAAGAAGACCTGATAAAACACAACATATCTCGTCATGACAAAAACCCTTATCCGTGCACTCTTTGTCATAAATCCTTTAACTACAAGAAAACACTGATAATGCACAAACGAAAACACTCCGGGAAAAAACCTTATGCCTGTAACATATGTAAAACTTcgttttctgacaaaaaaacttTGATGATGCACGAAATGAAGCACACGGGAAAAACACCGTACAAATGTCAATATTGTAGTAAAGCATTGCTTACGAAGCAATATTTGATTGTACATGAGAGAATACATACGGGTGAAAAGCCGTACTTGTGCACTACATGCCAAAAGTCATTTACCACCAAACAAAGCCTATTGGTTCATAAAAGAAGTCACACTGGCGAAAAACCATTTTCCTGTTCTGTGTGTAATAAAGCGCTACTTACCAAACAAAGTTTAGAGGTGCATGAAAGACTGCATAGTGGCGAAAGACCATATTCGTGCAACAtgtgtaaaaaaacttttatttacagTGAAAGTTTAGCTAAACATAACAGAATTCACACGGGAGAGAATCCGTTTGTTTGTTCTGTTTGTAATAAGTCTTTTGGTACAAAATCTCATTTGGTTGAGCACACAAGAATACACACTGGTGAACGCCCTTATTCTTGCACCGTTTGTAAAAAAGCATTTGCTTACAAGTCGGTTTTAGTAAAACACAATAGAACTCATACAGGCGAGAAACCATACCAATGTAACCTGTGCGAAAAAGCATTTATTTCCATCTCGTACTTGATAGACCACAAAAGAAAACATACAGGTGAGAAACCTTATTCTTGTCAAGTATGTCAAAAAGTATTTGCTTTACGCACGGATCTGAATAGACACAAAAAAGTCCACACTGGTGAAAAACCATATACGTGTCCTATTTGTTTTAAGTCGTTTTCGTATAAATCGTATTTGAATAAACACGTTAAAAGGCATTATGACGAAATGCCATAA
Protein Sequence: MEVKTENISREHFNEICRTCFSKSDLKLITSLVYNEDNYNINVSELLLEYLGLWIDDNDNFPNKICDKCKTILTTFYKFSRECSAKQSVLEYELSNVETETSEEHVKIKIEKEEEPETEWTELNNPNLSDTKSEKHPQTYVPVIQPNLIEGESLEQTFEHNPIEGTNFTHKLEYEYNPVKKTNLSDDLDQPYECNAAEKINDDQPYEQPYDYNPDIEVKVELEEKYDADKATFSNKDDKIIVKKVFTCEICEESFDTNSKLLRHNRTHSGEKPFSCTVCPKAFSLKCNLLRHNLTHTGEKPFKCEVCEASFSVKSNLIRHNRTHTGEKPFSCIICKKSFTYKEDLIKHNISRHDKNPYPCTLCHKSFNYKKTLIMHKRKHSGKKPYACNICKTSFSDKKTLMMHEMKHTGKTPYKCQYCSKALLTKQYLIVHERIHTGEKPYLCTTCQKSFTTKQSLLVHKRSHTGEKPFSCSVCNKALLTKQSLEVHERLHSGERPYSCNMCKKTFIYSESLAKHNRIHTGENPFVCSVCNKSFGTKSHLVEHTRIHTGERPYSCTVCKKAFAYKSVLVKHNRTHTGEKPYQCNLCEKAFISISYLIDHKRKHTGEKPYSCQVCQKVFALRTDLNRHKKVHTGEKPYTCPICFKSFSYKSYLNKHVKRHYDEMP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -