Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:26121339-26128161[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.5e-06 0.00014 23.0 1.2 1 23 161 183 161 183 0.98

2 15 1.4e-05 0.0008 20.7 4.8 1 23 189 211 189 211 0.98

3 15 0.00017 0.0094 17.3 4.1 1 23 217 239 217 239 0.98

4 15 0.0013 0.072 14.5 3.5 1 23 243 265 243 266 0.96

5 15 0.00028 0.016 16.6 1.6 1 23 286 308 286 308 0.96

6 15 0.00011 0.0064 17.8 0.6 1 23 314 336 314 336 0.97

7 15 0.00023 0.013 16.8 4.6 1 23 342 364 342 364 0.98

8 15 0.00095 0.054 14.9 1.2 1 23 370 392 370 392 0.97

9 15 8.1e-06 0.00046 21.4 2.0 1 23 398 420 398 420 0.99

10 15 1.1 61 5.3 1.3 1 14 426 439 426 446 0.79

11 15 3e-05 0.0017 19.6 0.9 1 23 450 472 450 472 0.98

12 15 1.3e-06 7.3e-05 23.9 1.4 1 23 478 500 478 500 0.99

13 15 9.3e-08 5.3e-06 27.5 2.7 1 23 506 528 506 528 0.98

14 15 1.4e-07 8e-06 26.9 0.7 1 23 534 556 534 556 0.99

15 15 3.8e-05 0.0022 19.3 5.9 1 23 562 584 562 584 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.5e-06	0.00014	23.0	1.2	1	23	161	183	161	183	0.98
2	15	1.4e-05	0.0008	20.7	4.8	1	23	189	211	189	211	0.98
3	15	0.00017	0.0094	17.3	4.1	1	23	217	239	217	239	0.98
4	15	0.0013	0.072	14.5	3.5	1	23	243	265	243	266	0.96
5	15	0.00028	0.016	16.6	1.6	1	23	286	308	286	308	0.96
6	15	0.00011	0.0064	17.8	0.6	1	23	314	336	314	336	0.97
7	15	0.00023	0.013	16.8	4.6	1	23	342	364	342	364	0.98
8	15	0.00095	0.054	14.9	1.2	1	23	370	392	370	392	0.97
9	15	8.1e-06	0.00046	21.4	2.0	1	23	398	420	398	420	0.99
10	15	1.1	61	5.3	1.3	1	14	426	439	426	446	0.79
11	15	3e-05	0.0017	19.6	0.9	1	23	450	472	450	472	0.98
12	15	1.3e-06	7.3e-05	23.9	1.4	1	23	478	500	478	500	0.99
13	15	9.3e-08	5.3e-06	27.5	2.7	1	23	506	528	506	528	0.98
14	15	1.4e-07	8e-06	26.9	0.7	1	23	534	556	534	556	0.99
15	15	3.8e-05	0.0022	19.3	5.9	1	23	562	584	562	584	0.99

Sequence Information

Coding Sequence: atggctGCTTTAAATTTGGCTAATATATGCAGAATTTGTTTGGAAAAAGACCCTAAACAAAGTTTAATCGAATACCACAAAATGCTACAAGTAAATTTGTACTTCATGTTAAATGATTGTACATCAGTGCagGCCAAAGTTAATGATAAACTACCctcaaaaatatgcaaaaactgcaaaatttcTTTGGTAAAACACTACGAATTTAGAAAATTAGCAAAAGAAAATGACACAAAACTTAGAGAACgaattgaaacaaaaaatattctacccataaaaatagAACATTTAGAAATTAAAGTCGAAAATGAAAGGAATGAATATGCAATAGAAAAAGAAAGTGATATGAGTAATACTGATGACGAAATTGAAGAATCTGTTGAAAATGAAAGAAGTGAATTGGTAGAAGAAAAATGTGTAGAATTGTCAGAAGAAACTACAATAAACAGTCAAagcaatacaaaaaaagttgagaAGGCATTCCAATGTAACATCTGTGCTAAATACTTTAAGACTAGTTCGGAATTACGAAAACATGTACAAATACATTCTGAAGAAAGACCTTATACATGTGATATGTgtggaaaacattttaaaacaaaacaatccTTAACTGAACATAAAAACCGTCACACAGcgatactAAAACATAAATGCAAAATATGCCTTCATGCATTTAAAATGCCCTACGATCTAAAAAAACATCTAAGAGTCCATGATATGCCCTACATGTGCAGTTCTTGCGGAAAATCGTACGCAAAAAAGTTGAGTCTCAAATTACACACGCAAAAACACCACCCCAGTGAAACTGACAAAAAGAATGACAAccaagaaacaaatgaaaaagaGAAAACATTTCAGTGTATAACGTGTGGTAAATTCTTTAAAGAAGCGTATCTTTTGCGAAGACACGAAAAAACGCACTCGACAGAGCGACCGTATGCCTGTGAAATATGCGGGAAAAGGTTTAAACTGATGGGAACATTACGGGAACACAAACAACGTCATACAGaggaCTTGAATTATGAATGCCACCTATGCGAAAAAAAGTTCAACATGCCCTGTAGTTTACGAAAACACTTGCAAGTGCACAAGGGCGACAAACGCTTTATGTGCAGCTATTGCGGCAAATCATTCCTGAAATCACTGGAACTAACAAACCATAACAGAATTCACACTGGCGAAAAACCGTATGAATGTGACATATGTCAAAGAAAATTCAGTCAAGGGTCAACACTGAAAAGTCACAAAAGAACGCACACGGGAGAAAAACCTTTCAAATGTACCCTGTGTGGAAAGTGCATGGCGAGCAGGGCACATGAAAAGATTCACACTACTGAAAGACCATACAACTGTGAAATATGTGGAAAACGATTTAAAATGATTGGTACATTAACTGAACACAAAAGGCGACATACTGgagaCCTAAAATACAAATGCAAACTCTGcaaaaaatctttcaaaatgCCCAGTGACTTAGGCAAACATCTTCGCGTCCACAAAGGGGTCAAACCTTTTATGTGTAGCTTCTGTGGCCGTTCTTTTACGCAATCTTCAAACCTTCAGTCACACACCAGAACCCACACTGGGGAAAAGCCGTTTCAGTGTACCACGTGCGGAAAGTCATTTACTAGCGCTTACAACGTGTCTGTACATATGCGCATACACACGGGAGAGTTGCCTTATCGGTGCAAGTTTTGTACAAAGAGTTGCCGGACAAAAGCAGACCTTGACAAACATATGAAAACGCATTAA
Protein Sequence: MAALNLANICRICLEKDPKQSLIEYHKMLQVNLYFMLNDCTSVQAKVNDKLPSKICKNCKISLVKHYEFRKLAKENDTKLRERIETKNILPIKIEHLEIKVENERNEYAIEKESDMSNTDDEIEESVENERSELVEEKCVELSEETTINSQSNTKKVEKAFQCNICAKYFKTSSELRKHVQIHSEERPYTCDMCGKHFKTKQSLTEHKNRHTAILKHKCKICLHAFKMPYDLKKHLRVHDMPYMCSSCGKSYAKKLSLKLHTQKHHPSETDKKNDNQETNEKEKTFQCITCGKFFKEAYLLRRHEKTHSTERPYACEICGKRFKLMGTLREHKQRHTEDLNYECHLCEKKFNMPCSLRKHLQVHKGDKRFMCSYCGKSFLKSLELTNHNRIHTGEKPYECDICQRKFSQGSTLKSHKRTHTGEKPFKCTLCGKCMASRAHEKIHTTERPYNCEICGKRFKMIGTLTEHKRRHTGDLKYKCKLCKKSFKMPSDLGKHLRVHKGVKPFMCSFCGRSFTQSSNLQSHTRTHTGEKPFQCTTCGKSFTSAYNVSVHMRIHTGELPYRCKFCTKSCRTKADLDKHMKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -