Bgla007671.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294045.1:2074829-2097929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.016 0.93 11.0 4.0 1 23 6 28 6 28 0.98 2 28 2.5 1.4e+02 4.1 0.2 1 19 150 168 150 171 0.92 3 28 0.021 1.2 10.7 3.0 1 23 177 199 177 199 0.98 4 28 0.0045 0.26 12.7 1.4 1 23 323 346 323 346 0.95 5 28 0.13 7.5 8.1 1.3 1 23 355 377 355 377 0.99 6 28 0.023 1.3 10.6 0.9 2 23 384 406 383 406 0.93 7 28 0.02 1.1 10.7 1.4 1 23 411 433 411 433 0.98 8 28 0.009 0.51 11.8 0.4 2 23 444 466 443 466 0.96 9 28 0.0013 0.072 14.5 0.1 2 23 472 493 471 493 0.95 10 28 0.00086 0.049 15.0 3.6 1 23 499 521 499 521 0.98 11 28 4.2e-05 0.0024 19.1 2.5 1 23 527 549 527 549 0.98 12 28 0.0012 0.067 14.6 2.5 1 23 565 587 565 587 0.98 13 28 0.25 14 7.3 0.6 2 23 598 619 598 619 0.97 14 28 0.00054 0.031 15.7 1.2 2 23 625 646 624 646 0.96 15 28 0.03 1.7 10.2 5.1 1 23 652 674 652 674 0.98 16 28 0.014 0.82 11.2 0.5 2 23 710 732 709 732 0.97 17 28 0.0074 0.42 12.1 0.4 2 23 739 760 738 760 0.94 18 28 0.0006 0.034 15.5 2.7 1 23 766 788 766 788 0.98 19 28 4e-05 0.0022 19.2 2.1 1 23 794 816 794 816 0.98 20 28 0.0055 0.31 12.5 1.9 1 20 853 872 853 875 0.93 21 28 9.2e-05 0.0052 18.1 0.7 1 23 879 902 879 902 0.95 22 28 0.042 2.4 9.7 0.3 1 23 906 928 906 928 0.97 23 28 0.023 1.3 10.5 0.4 2 23 935 957 934 957 0.93 24 28 0.0021 0.12 13.8 2.0 1 23 962 984 962 984 0.98 25 28 0.00078 0.044 15.2 1.2 1 23 1022 1044 1022 1044 0.97 26 28 5.1e-06 0.00029 22.0 1.4 3 23 1052 1072 1050 1072 0.96 27 28 1.6e-05 0.00092 20.5 3.8 1 23 1078 1100 1078 1100 0.97 28 28 0.00042 0.024 16.0 0.3 1 23 1106 1129 1106 1129 0.95
Sequence Information
- Coding Sequence
- ATGTTCGGAGATTTTTATACTTGCTGTAAGTGCAaggcaacttttaaaaattacgcATTGCTATATGAACATTACGAAACACATAAAGATGATTTAATCGATGACGAGCTAGGATTACCAGTAATCGAGGATTATATGGAGGAGCCATTAGATGATGATGAAGTGATTAGGGAAGAGCATACCACTGTTAAAACCAATAAAATAGTAAttcaagaaaataaacaaatatccaaaaaacaaatgaatatcaTAAAAAGGGAACATAATTGCAGTGTTTCAAATGCAATAGATGTTATGGAAGAAGAAAAGCAGGATGGTGATACTACCGAAGAATTTAACGAGAATTTGGAACAAATAAATGTTAGAAAACTTACTGTGTTGCCTCAAAATTCTACTAGTATAGAGAAatattttgaaGAAACAGCAATAAAATCCGAAGCTCATAAATATGAATGCGGAATATGTTCAGACAGATTTGAAacgaaaaataagtttttggaACACGGTATGAACATGTTCGGAGATCTTTACATTTGCTGTAAGTGCAaagcaacttttaaaaattacgcATTGCTATATGAACATTACGAAACACATAAAGATGATTTAAATACTGATGAGCTAGAATTACCAGTAATCGAGGATTATATGGAGGAGCTATTAGATGATAATAAAGTGATTAGGGAAGAGCATACCATTGCGGAAACCAATAAAATAGTAAttcaagaaaataaacaaatatctagAAAACAAATGGATGTCATAAAAAGTGAACATAACTATAGTATTTCAAATGCAACAGAAGTTACGAAAGAAGAAAAattaacGATAAAGATCAATAAGAGATTCTACGAATACCAAGTCACCACAACAAATGGAAAAAAGTGTTATCATTGCATAAACTGCGTACTGAAGTTCGAATCTAAGTcggtattaaaaaaacatttgccaACTCACAAGGAGAGTTACAATTGCGATTTATGCAACAAGCGATACAAATATTTACGCGCACTGGAACAGCACAAAGAAAAGGACCACAATAACCCGTCCTCGGATGGCACATACAAATGTGAATCATgtgaaaaagtattattaagtAAGAGCGGATACAAACTACATTTAAAAAAGCACGAAGGAGCGTATACTATTAAATGCGCCTTTTGTGATCGAGGCTTTTTCAACAGTTCAACATATCGCCTCCATCTTGGTTCCAAACATGGCAAGAGTGATTATGTTTGTGATGTATGTGGACGTCATATGTATAGCCAAACCAGCCTGGATAATCACCGACTTACACACGAAGAGGGCTATAAAGATAAGCCCAAATCACAGTGtaatatttgtgaaaaatggTTTGCATCTGAGAAAACACTACGAGTTCACATATACACACGACATGAATGTGCTAAATGGATTTGTGATATTTGTGGAAAAGAACTGAACAATAAGCAATCTTTGCAAACTCATACTGACATACATTTAGGCTTAAAACCTCACACTTGCTCGTACTGTGGAAGGGGGTTCGCAGATAAGACAACACTGACTTGTCATATTCGTATTCATACTGGAGAAAAgccatattgctgtaatttttgTGGCAAGAGGTTTGCCCAACCGGGAGCGTTTAAAATTCACAAAAGGATGCACTCTGGAGATAAACCCTTTCCATGTTCGAAGCATGGCAAAAGCGAATTTGTTTGTGACATTTGTGATCGCCATTGTTACAGCAAAACCAGTCTAGCAGGCCACATAATGACCCACGAAGAAAACTACAAGGAGAGACCTAAAGCTCAATGTCCTACGTGCCTTAAATGGTACTCCTCAGAAAAAACTTTGTATGTACATATGACTAGACACCAAATGGCCAAGTGTATTTGTGATATTTGCGGAAAAGAATTGAACAACAAAATGTCATTAGAAAATCACACAAATACCCATTTGGGCTTGAAACCGCACAAATGTTCACATTGTGGAAGAGGGTTTGCTAATGTCACCACACTTATTTGCCATGTTAGAACTCATACTGGAGAAAAGCCTTATTGTTGTAATTTTTGTGGGATGAGCAAGCTTAGTTTATCAAACCACAGATTGACCCATGATGACGCTTACAAAAACAGACCAAAAGTTCAGTGTTCTACTTGTGAAAAGTGGTTCGTTTCTGAAAGAAATTTACAACTTCATATAACCACAAGACATGAGAATGTTGGTAAATGTATCTGCGAGATATGCGGAAAGGTGTTAAACAACAAAAAAGCCATGGAGACTCATACAGTTATACATCTAGGTTTGAAACCACATGTGTGCAACTACTGCGGAAGAGGATTTGCCGATAAAAACACCCTGGTTTGCCATATTAGAACTCATACAGGAGAGAAACCCTACTGTTGCAAAACGTGCGGAAGGAGATTTGCACAACCTGGTGCTTTTAAAATACACACCAGGATGCATTCTGGTGAAAAACCTTATGCTTGCGACATATGCAAGGACACGTTAACATTGACAATAAACGAACGAAAGTTTGAATATATAATTTCAGTAAAAGATAACAAGAGGATTTTTCATTGCAGAGTATGCACAGAAACATTTAAACTAAAATCTGCACTGAAAAAACATCTGCCCGTACACAAGAAAACCTTTCAAtgtgacgtatgccaaaaagtCTACAAACAATTTTCCGCACTTTTAAAACACCAAGGAAAAGGCCACAAACTAGAGTTTCAGTGTgatgtttgtgaaaaaatattaacaagcGAACAGGGTTACAAAATTCACAAAATAAGACATGAAGTACCTTACGTGATCAAATGTGAGATTTGTGATGCTGGATTTTTCACAAACAGACAGTACAAGTTACATTTGGGCTCCAAGCATGGTCAGAGCCAGTACGTTTGTGAAATTTGCAGCAGGCATTGCTATGACAACACAGCTTTAGCAAATCACCTTTTGACACATGAAGAAGGATACAAAGAAAAACATAGAGTACAATGTCAAATTTGTAATATGTGGTTAATATCTCCAAAGATACTTCGATCTCATATCTACAAAAAACACAAACAGGGAAAGTTTATATGCCACACTTGTGGCAAAGAGTTAAATAGCAAAACCGCTTTAAAAACACACACTATCATACATTTAGGGTTAAAACCTCACTTATGTACGTATTGTGGTAGAGGATTCGCTGATAAATCAACTCTAAGAGGTCATATTCGAACTCATACAGGAGAAAAACCTTATTGCTGCCCCACGTGCGGAAAATGTTTTGCTCAACCAAGTGCGTTTAAGATACACAAACGATTGCACACGGGTGAAAAACCGTTTACCTGTGACATTTGCGAGCAAAGTTTTGTTTCGAGTAGTGTGCTTAATTCGCACGTTAAAGGCAAACATAAAGTCATGGATCAAAAACACTCTAGTTAG
- Protein Sequence
- MFGDFYTCCKCKATFKNYALLYEHYETHKDDLIDDELGLPVIEDYMEEPLDDDEVIREEHTTVKTNKIVIQENKQISKKQMNIIKREHNCSVSNAIDVMEEEKQDGDTTEEFNENLEQINVRKLTVLPQNSTSIEKYFEETAIKSEAHKYECGICSDRFETKNKFLEHGMNMFGDLYICCKCKATFKNYALLYEHYETHKDDLNTDELELPVIEDYMEELLDDNKVIREEHTIAETNKIVIQENKQISRKQMDVIKSEHNYSISNATEVTKEEKLTIKINKRFYEYQVTTTNGKKCYHCINCVLKFESKSVLKKHLPTHKESYNCDLCNKRYKYLRALEQHKEKDHNNPSSDGTYKCESCEKVLLSKSGYKLHLKKHEGAYTIKCAFCDRGFFNSSTYRLHLGSKHGKSDYVCDVCGRHMYSQTSLDNHRLTHEEGYKDKPKSQCNICEKWFASEKTLRVHIYTRHECAKWICDICGKELNNKQSLQTHTDIHLGLKPHTCSYCGRGFADKTTLTCHIRIHTGEKPYCCNFCGKRFAQPGAFKIHKRMHSGDKPFPCSKHGKSEFVCDICDRHCYSKTSLAGHIMTHEENYKERPKAQCPTCLKWYSSEKTLYVHMTRHQMAKCICDICGKELNNKMSLENHTNTHLGLKPHKCSHCGRGFANVTTLICHVRTHTGEKPYCCNFCGMSKLSLSNHRLTHDDAYKNRPKVQCSTCEKWFVSERNLQLHITTRHENVGKCICEICGKVLNNKKAMETHTVIHLGLKPHVCNYCGRGFADKNTLVCHIRTHTGEKPYCCKTCGRRFAQPGAFKIHTRMHSGEKPYACDICKDTLTLTINERKFEYIISVKDNKRIFHCRVCTETFKLKSALKKHLPVHKKTFQCDVCQKVYKQFSALLKHQGKGHKLEFQCDVCEKILTSEQGYKIHKIRHEVPYVIKCEICDAGFFTNRQYKLHLGSKHGQSQYVCEICSRHCYDNTALANHLLTHEEGYKEKHRVQCQICNMWLISPKILRSHIYKKHKQGKFICHTCGKELNSKTALKTHTIIHLGLKPHLCTYCGRGFADKSTLRGHIRTHTGEKPYCCPTCGKCFAQPSAFKIHKRLHTGEKPFTCDICEQSFVSSSVLNSHVKGKHKVMDQKHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -