Bgla028174.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294052.1:24967502-24983494[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00065 0.037 15.4 2.9 2 23 149 170 148 170 0.97
2 15 0.015 0.86 11.1 0.8 1 23 182 205 182 205 0.96
3 15 0.00025 0.014 16.7 0.8 1 23 272 294 272 294 0.99
4 15 5.7e-07 3.3e-05 25.0 3.8 2 23 301 322 301 322 0.97
5 15 0.00095 0.054 14.9 2.6 2 23 344 366 343 366 0.96
6 15 0.00038 0.022 16.1 4.2 1 23 441 463 441 463 0.97
7 15 0.00051 0.029 15.7 1.6 1 23 469 492 469 492 0.92
8 15 2.8e-06 0.00016 22.8 0.8 1 23 497 519 497 519 0.98
9 15 3.5e-05 0.002 19.4 4.2 2 23 531 552 530 552 0.97
10 15 5.4e-07 3.1e-05 25.1 1.7 1 23 559 581 559 581 0.97
11 15 5.1e-05 0.0029 18.9 1.6 3 23 593 613 591 613 0.92
12 15 0.00011 0.0065 17.8 4.5 1 23 619 641 619 641 0.99
13 15 7e-05 0.004 18.5 1.7 1 23 647 669 647 669 0.96
14 15 2.5e-07 1.4e-05 26.1 0.3 1 23 675 697 675 697 0.99
15 15 0.00016 0.0093 17.3 0.2 1 23 703 727 703 727 0.93

Sequence Information

Coding Sequence
atgatAGTAGAAGAATACAAAgatgtaattttagaaaaaatatgtagatcctGTATGAATCAGTATGAAGAAATGCGCAATGTGTTCGAAAGCAGTACGGTTCAAGATGGACAAACAATACATCTAGCAGATATGTTAATGGCTTGTGCCTCTATATCGGTAGTTTCTAATGATGGGCTTCCATACTTGCTGTGTACCACTTGTGAAACAAAACTACAGGCCTCCTTCGAATTTAGACGGCTATGTGAAAAATCGGACAACATCTTACGAGAAATCAGCCCACCTGTTGTTGCCAAACAGGAAGAAATCATCATAAAAACGGACGTTTTTGAGGAAGACGACGAGGATGATGACGAGCCACTCGCGAAGTATGGGACGATTAAGAAAAAAGTGAAACCGTTGGCGAAATCTAAAAAGACTAGAAAAAAACGCAACACCGAAACAAAGTGCAAATATTGTAATAaggatttaaaaagttttaagaacTTAAAAGTACATCTGCGATTACATCAGAATGACGATGACGCAACAAAAGTCAAAGAACACCCATGTTCCGAATGCTCCGAATTGTTCAAAACAAAAGAAGAAATGATAGAACACTCTAAAACCGTTCACCCTAACTTAGAGCCAATCGTGCAAATCAAAAACGACCAAAATTCGGACACCGATTCATTGAATGACGCTTTTGGCAATGACGATTTCGGCAATGacgattttgaagaaaataacgTCGAGATAATTgtgattaaaaaagaaaaaggagAGAAAtcggagaagaagaagaaggagaaaAAGCAGAAAGATAGAGCCATTTACGAGTGTAAAGAATGTAATAGGATGATGACTACTTATGTGGGGCTGAAGGTGCACATGAGGAGGCATACAGGCAACGATCTGGCTGAATGCAAGgtATGCAACAAGTCATTCACAAAGAAAAGTCATTTAGCTCGTCATATGCTAACTCATGGAGACTATGTTCCACCTATAATTATTAAAAGAGACAAGGATAGGGAAAAATTACAgACCATGGAGTGTGAGTTTTGTGATAGGAAGTTCAAATACCGAAAAAGCTACGTGCATCACATGCAAGTTGAGCACGGCATGCCGGCCGACTGCGATATAGGCGATATCAAACTTAAAGATGAAGATGGCATCCAAGTTCTTGAACATCAAAGCGCTGAGTCAATTACAGAAAATTTAGATAAACCAAGCGATGCTACGGACCCCAACGACACGGGAGACATGATGGCGTCGTTCATAATCGACGACGAGATGGAAATCAAAAACGATCAGAACAAAAAAGGAAAACCCATCAAAATCCACACCTGTCACGTGTGTCAAGCGATTTTCGCCAGGGCCAATCATCTGACCAGACACATGACCCTGCACAGGGCCGTACTGACGCACAAATGTGAACGTTGCGACAAAGCCTTCTCGGGGCAAGAACATCTGGACAAACACGTGGAAGAGGAGCACATCAACAAACCCTACGTGTGTACCGTTTGTAATAAACCCTTTAGCAGGGGAGAACACCTAATCAGGCATCTGAAAGTCCATCAAAGTGGTACCACTGAGAACGATGGATCGTTGAAATGTTCAATCTGTGAACATACATTTACACGTTCGGACCATCTGGCAAGACATACCAAAATTCATTTACTTCAAGATAAGAGACATGTGTGTTTCGAATGCGGAAAGGCTTTTAACAGATTGGATAACCTGAAAACTCATCAAAGAATACACACGGGCATAAAGGAGACCGCCAAGTTGCATTTATGTATCTACTGCGGAAAGGAGTTTAACAATTCTAGTAATATGATTGTCCACATGAGAAGACACACGGGCGAGCGACCATACAAGTGCAACGAGTGCGGTAAAGGGTTCCCGAGATCTCACGACTTAAAGTGCCACGAACGAACCCATTCGGGTGAAAAGCCTTATCTTTGCACGCTGTGCGGAAAATCGTTCAACAAGAGCAACAAATTGCTGAGACACAGCCGTGTGCACACCGGTGAACGCCCGTACGTCTGCAACATGTGCGGTCGCGCGTTCACCCAGTCGAACGACCTGGCCTTGCACATGCGCAGACATACCGGTGCTCGCCCCTACACCTGCGGTGTCTGCCCCGCCCGTTTCATCCAGTCGGGTCAGCTGAAGACGCACCGAAGAAGCACAGGTCACTGGATGGAGACTCAACCAGACCTAAAAGGAGGACACAGAGTGGAACCCGTCACTACCAACGTAGAACCCGTACCAATAAAGTTCAAATCCCACGGGAAGAAGAAGGAACCCGTGGATATAGACTTAATAGGCATTCCACCGAAGATCGAACAACCCACTGCCCCTATTCTAGGCCCCGACAATCCCATGATAATCAACGCAGTCAACGCAGTAAATTCAAAAATCTACCAAAGTTCAGAAATGATCAATTTGACCACGATCCAGGGTCCAAACGGGGAGGAGATCAAGTTCAAAACTGAGTTACCGACTTATACGATTACCGAAGATTTTCAAAATGATAAGATAATTAGAATAGAGAACAGCGAAGCTGGTACATTCCAAGATAACGTCACCGTGGTATATTCGACCGTGGCGGGAGGCAATAATCCTACGTTTACGCAGTCTGAAACTTATCATTTTTCCGCTTTCCAGCCATAA
Protein Sequence
MIVEEYKDVILEKICRSCMNQYEEMRNVFESSTVQDGQTIHLADMLMACASISVVSNDGLPYLLCTTCETKLQASFEFRRLCEKSDNILREISPPVVAKQEEIIIKTDVFEEDDEDDDEPLAKYGTIKKKVKPLAKSKKTRKKRNTETKCKYCNKDLKSFKNLKVHLRLHQNDDDATKVKEHPCSECSELFKTKEEMIEHSKTVHPNLEPIVQIKNDQNSDTDSLNDAFGNDDFGNDDFEENNVEIIVIKKEKGEKSEKKKKEKKQKDRAIYECKECNRMMTTYVGLKVHMRRHTGNDLAECKVCNKSFTKKSHLARHMLTHGDYVPPIIIKRDKDREKLQTMECEFCDRKFKYRKSYVHHMQVEHGMPADCDIGDIKLKDEDGIQVLEHQSAESITENLDKPSDATDPNDTGDMMASFIIDDEMEIKNDQNKKGKPIKIHTCHVCQAIFARANHLTRHMTLHRAVLTHKCERCDKAFSGQEHLDKHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQSGTTENDGSLKCSICEHTFTRSDHLARHTKIHLLQDKRHVCFECGKAFNRLDNLKTHQRIHTGIKETAKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCNECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNMCGRAFTQSNDLALHMRRHTGARPYTCGVCPARFIQSGQLKTHRRSTGHWMETQPDLKGGHRVEPVTTNVEPVPIKFKSHGKKKEPVDIDLIGIPPKIEQPTAPILGPDNPMIINAVNAVNSKIYQSSEMINLTTIQGPNGEEIKFKTELPTYTITEDFQNDKIIRIENSEAGTFQDNVTVVYSTVAGGNNPTFTQSETYHFSAFQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-