Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:961805-963583[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.5e-05 0.0043 18.4 1.5 2 23 124 145 124 145 0.96

2 16 0.0018 0.1 14.0 1.0 1 23 155 177 155 177 0.99

3 16 0.00015 0.0084 17.4 0.1 1 23 183 205 183 205 0.93

4 16 0.00013 0.0074 17.6 0.2 1 23 211 233 211 233 0.93

5 16 0.03 1.7 10.2 0.1 3 23 246 266 245 266 0.99

6 16 2.4e-05 0.0014 19.9 5.9 2 23 276 297 275 297 0.96

7 16 0.0029 0.17 13.4 0.9 1 23 306 328 306 328 0.98

8 16 8.8e-06 0.0005 21.3 1.3 1 23 334 356 334 356 0.91

9 16 0.003 0.17 13.3 0.2 1 23 362 384 362 384 0.93

10 16 0.00015 0.0087 17.4 3.0 1 23 390 412 390 412 0.98

11 16 0.00069 0.039 15.3 0.8 1 23 418 440 418 440 0.98

12 16 2.5e-07 1.4e-05 26.1 1.7 1 23 447 469 447 469 0.98

13 16 2.4e-06 0.00014 23.1 2.8 1 23 475 497 475 497 0.97

14 16 6.8e-05 0.0039 18.5 3.3 1 23 503 525 503 525 0.97

15 16 7e-05 0.004 18.4 3.8 1 23 531 553 531 553 0.96

16 16 0.0043 0.24 12.8 0.1 1 23 559 581 559 581 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.5e-05	0.0043	18.4	1.5	2	23	124	145	124	145	0.96
2	16	0.0018	0.1	14.0	1.0	1	23	155	177	155	177	0.99
3	16	0.00015	0.0084	17.4	0.1	1	23	183	205	183	205	0.93
4	16	0.00013	0.0074	17.6	0.2	1	23	211	233	211	233	0.93
5	16	0.03	1.7	10.2	0.1	3	23	246	266	245	266	0.99
6	16	2.4e-05	0.0014	19.9	5.9	2	23	276	297	275	297	0.96
7	16	0.0029	0.17	13.4	0.9	1	23	306	328	306	328	0.98
8	16	8.8e-06	0.0005	21.3	1.3	1	23	334	356	334	356	0.91
9	16	0.003	0.17	13.3	0.2	1	23	362	384	362	384	0.93
10	16	0.00015	0.0087	17.4	3.0	1	23	390	412	390	412	0.98
11	16	0.00069	0.039	15.3	0.8	1	23	418	440	418	440	0.98
12	16	2.5e-07	1.4e-05	26.1	1.7	1	23	447	469	447	469	0.98
13	16	2.4e-06	0.00014	23.1	2.8	1	23	475	497	475	497	0.97
14	16	6.8e-05	0.0039	18.5	3.3	1	23	503	525	503	525	0.97
15	16	7e-05	0.004	18.4	3.8	1	23	531	553	531	553	0.96
16	16	0.0043	0.24	12.8	0.1	1	23	559	581	559	581	0.95

Sequence Information

Coding Sequence: ATGCAATCAATAAAACAAGAATTTGATATGGAACTTGATGATTATCTCGAAAATTGGACAGGCATTTCAATAAAAACAGAAGACAATGAAATCGAAGAAGAGAAAGAAACAGAAGAAAACCTTTTCACTGAATTTGTTTTTCATGACACACAAGAACAATTTATTGAAAATCCCAGGGAAAATCTACTAGAAGAAAGTCATGAGCTACCTAgtatttcaattaaaataaatgaagaaGAAGATATCCCTGAAATACTAAgcgttaaacaaataaaagaaGAAACTCGAGACAAAACAAATGAATATCCAAAAGAAGAAAACTTCAACGTTCTTGATTTAGAAGTGGAAAATACTGCGGAAAAGAAAAACGTATGTAGAGTTTGCAAAAGATCATTTCGGTTCCCTTACGATTTAAAAAGACACACCCTTTCCCACTCTAATAAAGGTAGTGcgggaaaaatttttaaatgtgaagTGTGCACAGGAAGTTTTTTATTTCCAGACTCTTTGAAAAAACATTTGCGCAGACACATCGCAGGAAATCCGCACGCATGCGCTGATTGCGGAAAAATTTTCATTAGTGCGGAAAATCTAGAAGAACATAAGGTAATTCATTCGGAAGAAAAACCTTATATTTGCATAGAGTGCGGAAAAACTTTCGCACAATCTATGCAGTTAAGACAGCATGCCCGCGGGCACCCAAGAAAATCGCTTAGTGCGGAAAAAAGCACACTGTGCCCGATTTGCAAAGAACCCGTCAAATTTCCAAATACTGTTTTAACGCATTTGCGCACGCATACCAAATTCAGTGCGGACAAAAGATGCACATGTTCAATTTGcggaaaattctttaaatttccTCACGACTTGAAAAGACATTATCTCACACACCCGGAAAGTAGTGCGGGAAAAAGTTTTAGATGCGAAATGTgcgcaaaaacatttttattcccGAACTCTCTGAAAGTACACGTGCGTAAGCATACTGGACTAGATCCGCACATGTGCACAGAGTGCGGAAAAACTTTTACAAGTGCGGAACTACTAAAAAAACACGTGGTCTTTCATTCTGCGGAAAAACCTTACATTTGCATCAAGTGCGGAAAACCTTTCGCAGAATCTTCTAAATTAAGACTACATGCCCTCAGGCATACAGGAGAAATCCCCCATAAATGTACACAGTGCAAAAAAGAGTTTGCAAACATAAGAAACCTAAATTTGCACATGGACAAACATAAAAAGAAGAACCCCTACGTTTGTATGGTGTGCGGAAAAAGTTTTTTGCAGTCCTTTATGTTAAAATCGCACGAAAAGATGCATACCCTAATACATAAAGCATATTCGTGCACTCTTTGTGATAAACTCTTCACTTCATCCTCAAACCtacaaaaacacattaaaatgcACACGGGAGAAAAGGTACATTCTTGCACACTTTGtgataaattttttactttagcgTCAAATCTGCAAAGACACATAAAAATGCATACCGGTGAACGAAATCATGTTTGCAACACGTGCGGCAAAACTTTTACGCTTGCCGCTCATTTGAAGACGCATAATTTGACGCACACCGGCGAAAAAAAGCATGCGTGTAAATTGTGCGGAAAGAGGTTCGCGCAGACGGGGCATTTGAGTAGTCATATGTTTACACATACGGGGGAGAAAAGGCATTTTTGTCCGGTGTGCGGTAGAGGGTTTGGACGTGGAGCTGCTATGAGGGTGCATTTGCTGATACATCAGAAGGTTAAaaccaatggagatttctcccgttag
Protein Sequence: MQSIKQEFDMELDDYLENWTGISIKTEDNEIEEEKETEENLFTEFVFHDTQEQFIENPRENLLEESHELPSISIKINEEEDIPEILSVKQIKEETRDKTNEYPKEENFNVLDLEVENTAEKKNVCRVCKRSFRFPYDLKRHTLSHSNKGSAGKIFKCEVCTGSFLFPDSLKKHLRRHIAGNPHACADCGKIFISAENLEEHKVIHSEEKPYICIECGKTFAQSMQLRQHARGHPRKSLSAEKSTLCPICKEPVKFPNTVLTHLRTHTKFSADKRCTCSICGKFFKFPHDLKRHYLTHPESSAGKSFRCEMCAKTFLFPNSLKVHVRKHTGLDPHMCTECGKTFTSAELLKKHVVFHSAEKPYICIKCGKPFAESSKLRLHALRHTGEIPHKCTQCKKEFANIRNLNLHMDKHKKKNPYVCMVCGKSFLQSFMLKSHEKMHTLIHKAYSCTLCDKLFTSSSNLQKHIKMHTGEKVHSCTLCDKFFTLASNLQRHIKMHTGERNHVCNTCGKTFTLAAHLKTHNLTHTGEKKHACKLCGKRFAQTGHLSSHMFTHTGEKRHFCPVCGRGFGRGAAMRVHLLIHQKVKTNGDFSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -