Bgla019311.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
pol
Assembly
GCA_958510825.1
Location
OY294048.1:42699041-42722397[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3.9e-05 0.0022 19.3 2.4 1 23 145 167 145 167 0.97
2 20 7 4e+02 2.7 0.1 1 23 173 195 173 195 0.94
3 20 0.94 54 5.5 2.9 1 23 216 238 216 238 0.94
4 20 0.00087 0.049 15.0 2.1 1 23 244 266 244 266 0.97
5 20 0.0032 0.18 13.2 2.6 1 22 278 299 278 299 0.94
6 20 3.4e-06 0.00019 22.6 4.4 1 23 303 325 303 325 0.99
7 20 0.0029 0.16 13.4 1.2 1 23 331 354 331 354 0.93
8 20 3.3e-06 0.00019 22.6 1.2 3 23 362 382 360 382 0.96
9 20 0.008 0.45 12.0 2.1 2 23 389 411 388 411 0.96
10 20 0.0024 0.14 13.6 0.3 1 23 417 439 417 439 0.98
11 20 6.5e-05 0.0037 18.6 3.0 1 23 445 467 445 467 0.99
12 20 1.5e-06 8.3e-05 23.7 0.9 1 23 473 495 473 495 0.99
13 20 2.5e-05 0.0014 19.9 1.0 1 23 501 523 501 523 0.98
14 20 0.0013 0.073 14.5 2.4 1 23 529 551 529 551 0.97
15 20 1.8e-05 0.001 20.3 2.7 1 23 557 579 557 579 0.97
16 20 0.00048 0.027 15.8 0.1 3 20 587 604 586 606 0.93
17 20 4.4e-05 0.0025 19.1 1.0 1 23 613 635 613 635 0.98
18 20 2.3e-05 0.0013 20.0 1.0 1 23 652 674 652 674 0.97
19 20 6.9e-06 0.00039 21.6 2.8 1 23 684 706 684 706 0.98
20 20 0.4 23 6.6 0.1 2 23 723 743 722 743 0.97

Sequence Information

Coding Sequence
aTGGAAAATTTGGaggatgtttataaaatttgtgggATTTGTTTATCAAGATCAAATCTTATTAACACAAAGGATAACGAAAATGTATCCAAACTGCTATCGGAATATCTGCATATTAATGTGgTTGTGGGAGACGAGTTGCCACAATATATTTGCTGCCAATGCAAAAATCACATCTTTAGTTTCTATAAGTTTGTCAAAGATGGAAAATCGATTATagctaatctaaaaaaaatactattcgAATCACCAAAtacctctaaaattaaaatagagccGCTAGAGAGCGAACAGTGCTTTGAAATagatgtcaaaaatttaaaaattgagatcAATGATATAGAAAACCTCGTAGAAAACAGTGAGTTTGTATTTAAAACCGAAGAAACTAATGAAATAAAGAAAGAGGAGATACAAATTACAGAAAAGGAATATACGTGCAACCATTGTAACAAAACCTACATCGACGAATCAAAATACAATCGTCATATGGCAGCTCACACTGCTGTAAAATCATTTCAATGCATTTATTGCGGAGCAAAATTTCTTGAAGAAGAACTTTTGTCTGTTCACGTCCAGAAACACGACGAAAATAATCCTCTAGCATCACATTTATTAGCTCATGTTCGGAAGAAACATCAAGAGTTTAAATGTTCACATTGTCAGGAGTTATGCAATGGGCAGATTTCCTTGGCAAGACACGTATTCGAACATACTTCTGAAAAACCATTTAAATGCTCAAAATGTGAGAAAGGCTTCTTTGATGTACTTCATTTGCGTCGCCACATGATTGGCCACACTAAACCTCAAGTAGAGCTGAAGAGAAATTCGTTTGACTGTCTTTATTGTAAAATGGTATTTAGTTCGCAAAGCAAGTTAACTGATCACTATTGTACACAAAAGCCGTTTAAATGTCCGAAATGCGAGAAAAAATTTCACCGTAAAGTGAATCTAAGGGTCCACATTCGCAGACACACAGCAACTAAATCCTATTTTTGCTCTCAGTGTAAAAAATCGTTTGTTCAAAAGaacgttttaaaattacatgttttgCAAGTACATATCGGAAAAAAGCCACATTTATGTTCTGAGTGTGGTAAAGGGTTTTTTAACCTGGGTAATTTAAACGTTCATATGCGCACTCATACCAAAGAAAAACCATGTAAGTGTTCTTATTGTGATGATGTTTTTCGTGATCTCACTGCGCTAATTTTACACACACGTCGTAAACACACTGGAGAACGACCATACGCTTGTACTATGTGCGATGGAAAATATATTTCCTCCAATGCTTTAAAAGCGCATTTTCGTACTCACACCGGcgaaaaaccatataaatgttCTGTTTGCGAGCGATGTTTTGGTTCAAGTTCCACTCTGAGTAGTCATCAAAAAATACACACGGGCCAAAGGgattttaaatgcaaaatttGCGAAAATACATTTCCAAGGTCTTCGAATTTGCGGGAACACTTACGTGTACATACAGGGGAACGGCCTTATAAATGCCCTCATTGTGACAAAGCGTTTGGGAAACTGATTACTTTAAAGAATCATATTGTTACCCATACTGGTGATAAAAAACACGAGTGCTCTATTTGCCTGAAGAAATTCATCAAAAAGTGGAATTTAGAGCAACATTTTCTCACACATGCAAAGGTTACTTCTTTCGATTGTCCACACTGTGGGAAAacaatttctcaaaaaaagaattttgagCGACATCTTCTCAAACATGAACGCAAAGAAGAAAATGCTTGCTTAGAATGTGGGAAAACTTTCGCAAAGTCgtggaatttaaaaaatcacactgaaatatgcaataaaattgGAAAGTATGAGTGCACAACTTGTGAAAGAAAATTCGCATCAAAAACTGGTCTGACTAAACATATGGTATCACATAATACAGACGAATTGCAGTCGTTACcgcgaaaatttgaaaaacctgAGTATGACTGTAATGTCTGTGATAGAAAATTCACTTCCAGAGGTAGTTTGACCAATCACACTAAAGCACACAACTCAGATAACGCGATTAAAAACGACTATACTTGCTTGATTTGTGGAAAAAAATTTACTAGAAAAAGTACTCTATTTAATCACAGCCAGTCACATAATCCAGGAATATCGGGCGTTTTATCCCAGAGTTCTGGAGTATTAGACAAATGTTTGCTTTGTGATCAATCACTTTCCGCAACTAACATGGCGGACCACATTCGAATGCATTCTGGGGAAACTCCATTTAACTGTACAATTTGTGCTAAAGGAAATGAAGAATTGGTGGTAAGGATAACTGGAGGTTCTTTTGTGGCTCAGTTATTGGCACAAGAAACTGGACATTCTTTTAAAGGACCtgtaaatGGATTTGAAGATACCTACATTTTCATTCCTCTAGATAATGTTTATTTGCCTCATACTAAAAGGGTTGGAAGAATTACTAAGCGACTAGTTGATGATAACAGGgTTATTTGGGCAGAAACTCAAAAAGTAAAGCACAGACAGAAGCGCGATTTGACTACAATTGATCCATCGGATGTGCCAATTTTTCGAGTTAAAAGGTTAAAAGAAAAGCGAAGTAAAAGGAATGTGTTTAAAAGACCACCACCAACAAAATTCGATAACACTTTTAATGATGAACTATGGAACCAGGAATGGTATTTGGGAGAAACTGGAAAATGTGTGATGTGTGACTTTTCCAGGGCATTTGATAGAGTGCCTTTACAAAGACTGTTATGTAAATTAGATGCAGCTGGAATCAGGGGATGCTTGCTCTTGTGGATAAAAGACTTTTTATCGAATCGGTTATTTTCTGTAAGAATAGGAGATTCTCATTCAACTTGGCTCAACGTACTCAGTGGCGTACCGCAGGGCTCCGTTTTGGGCCCAATACTTTTCCTCATATACGCAGCTGACCTTCTGTTCCTTATTAAATCTGTTTGTTCAGCATACGCCGATGACACCAAGTTTTATGGAAATCCACTTACTTCCCACCAAGAAATGCAGCAGGATCTAGAAACAATTACAAAATGGTGCTCTGACTGGCTCATACCTcttaatattgaaaaatgtgTTGTACTACATATGGGCAAAAACAATCCAAACTGTGACTATATTATCTCTGGAAAGACAATTCGTGCTGTTGAATCCCATTCTGATCTTGGTGTTCTAATCTCTTCAGATCTCTCCTGGACACAACATATTGCGAACATATGCAAAAAAGCTAATACAAAGCTTTATCTGCTTAACAAAACCTTTTCCAGTATAACACAGTCAAGCTTTGTTCAGCTCTACAAAACATATGTTCGTCCAATACTGGagttctgtggacctgtatgGAATGCAGCATTAGCTCGGGATAAAAAGTTATTGGAAAGTGTTCAACGATTAGCTACCCGAACTAGGTATGGAGCCAACAGACCCAGTTACGAAGAACGACTCAACATGTTTAACCTTTTGTCGTTTGAAGAAAGAAAAAACCGTGGTGATATGTTAATTACCTACCGTGCCCTGAACAATAAGTTTCTAGTTGATCTTTCGTCGATTTTTCAAATGAATGATGACACTAGACTTCGCGGTCATCCGCTTAAGATTAAACAAGACTTTAGAAATAGTGTTCGGCAAGGATTTTTGTGTAATCGCGTGTTTAGTCTCTGGAACTCGTTGCCCATAGAAATAGCCTGTGCACCTACAGtaaactcttttaaaaatagatttgacGAATGGTCTTAG
Protein Sequence
MENLEDVYKICGICLSRSNLINTKDNENVSKLLSEYLHINVVVGDELPQYICCQCKNHIFSFYKFVKDGKSIIANLKKILFESPNTSKIKIEPLESEQCFEIDVKNLKIEINDIENLVENSEFVFKTEETNEIKKEEIQITEKEYTCNHCNKTYIDESKYNRHMAAHTAVKSFQCIYCGAKFLEEELLSVHVQKHDENNPLASHLLAHVRKKHQEFKCSHCQELCNGQISLARHVFEHTSEKPFKCSKCEKGFFDVLHLRRHMIGHTKPQVELKRNSFDCLYCKMVFSSQSKLTDHYCTQKPFKCPKCEKKFHRKVNLRVHIRRHTATKSYFCSQCKKSFVQKNVLKLHVLQVHIGKKPHLCSECGKGFFNLGNLNVHMRTHTKEKPCKCSYCDDVFRDLTALILHTRRKHTGERPYACTMCDGKYISSNALKAHFRTHTGEKPYKCSVCERCFGSSSTLSSHQKIHTGQRDFKCKICENTFPRSSNLREHLRVHTGERPYKCPHCDKAFGKLITLKNHIVTHTGDKKHECSICLKKFIKKWNLEQHFLTHAKVTSFDCPHCGKTISQKKNFERHLLKHERKEENACLECGKTFAKSWNLKNHTEICNKIGKYECTTCERKFASKTGLTKHMVSHNTDELQSLPRKFEKPEYDCNVCDRKFTSRGSLTNHTKAHNSDNAIKNDYTCLICGKKFTRKSTLFNHSQSHNPGISGVLSQSSGVLDKCLLCDQSLSATNMADHIRMHSGETPFNCTICAKGNEELVVRITGGSFVAQLLAQETGHSFKGPVNGFEDTYIFIPLDNVYLPHTKRVGRITKRLVDDNRVIWAETQKVKHRQKRDLTTIDPSDVPIFRVKRLKEKRSKRNVFKRPPPTKFDNTFNDELWNQEWYLGETGKCVMCDFSRAFDRVPLQRLLCKLDAAGIRGCLLLWIKDFLSNRLFSVRIGDSHSTWLNVLSGVPQGSVLGPILFLIYAADLLFLIKSVCSAYADDTKFYGNPLTSHQEMQQDLETITKWCSDWLIPLNIEKCVVLHMGKNNPNCDYIISGKTIRAVESHSDLGVLISSDLSWTQHIANICKKANTKLYLLNKTFSSITQSSFVQLYKTYVRPILEFCGPVWNAALARDKKLLESVQRLATRTRYGANRPSYEERLNMFNLLSFEERKNRGDMLITYRALNNKFLVDLSSIFQMNDDTRLRGHPLKIKQDFRNSVRQGFLCNRVFSLWNSLPIEIACAPTVNSFKNRFDEWS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-