Bgla005120.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294044.1:50653457-50661618[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.002 0.11 13.9 0.5 1 23 147 170 147 170 0.97 2 20 0.11 6.1 8.4 2.5 3 23 205 225 204 225 0.96 3 20 2.3e-05 0.0013 20.0 0.6 1 23 228 250 228 250 0.96 4 20 2.2e-05 0.0012 20.1 1.4 1 23 256 278 256 278 0.99 5 20 1.4e-05 0.00082 20.6 0.9 1 23 285 308 285 308 0.96 6 20 2.2e-05 0.0013 20.0 0.1 1 23 314 336 314 336 0.97 7 20 0.0051 0.29 12.6 0.4 3 23 374 394 373 394 0.97 8 20 4.2e-05 0.0024 19.2 0.6 1 23 397 419 397 419 0.95 9 20 2.7e-05 0.0015 19.8 2.4 1 23 425 447 425 447 0.99 10 20 4.1e-05 0.0024 19.2 0.3 1 23 454 477 454 477 0.95 11 20 0.00099 0.056 14.8 0.3 1 23 483 505 483 505 0.98 12 20 0.0053 0.3 12.5 2.4 1 23 512 535 512 535 0.89 13 20 0.46 26 6.5 0.4 1 23 687 710 687 710 0.95 14 20 0.018 1 10.9 1.1 2 23 751 772 751 772 0.96 15 20 0.00076 0.043 15.2 4.7 1 23 775 797 775 797 0.96 16 20 1.9e-05 0.0011 20.2 1.4 1 23 803 825 803 825 0.99 17 20 2.7e-05 0.0015 19.7 0.2 1 23 831 854 831 854 0.96 18 20 0.00067 0.038 15.4 0.7 2 23 861 882 860 882 0.96 19 20 0.044 2.5 9.6 1.2 1 23 889 912 889 912 0.94 20 20 0.00051 0.029 15.7 3.4 5 23 922 940 921 941 0.94
Sequence Information
- Coding Sequence
- ATGGATCAACTAGGTgtTAAAGAAGACGATGAATTTCCTCAATATCTATGTGAAAAATGCACAACTACTCTAACAGAATTTCACAAATTTAAATCTGATTACAAAAATAATGAagagtacttaaaaaatattaaagacaatGAAGCGCACTTAAGGACTCTTATAAAGAgcaatgttatttttgaaaaagacaatgatattttaaagatttcAGAAAACAATAGTCTTATACcaattaaaaatgaaatgaaTGAAGATGATGGCGGTGCTGATTCTACTATGGAAAATTGGGATGGTAATGGTGATACAATGGATACAAAACCCATTGTTGTTAGagatttatttaatgaaaattttagcAAAGATATACATTTAAAACGTCTACTTCAAACTGAAGTAAACGACAACACCGCTTATGTTAAACAGGAAACAGAAAAATATTCTTGCGAAGAATGTGGGGATGAATTTTCAATGCAAACAGGCTTTGTTAAACATATGCGCCAAAAACATCGTCAGCCAGGTATAGATTTTAAAAAGTGTTCCTCACAAATTGGAGTCAAACCTGTCGTAAACGTAGATTGCAAAAAAACACCTTCAAGGTTGGAAaacttttgcaaaaaatgtaaaatttgttttgcAAACGCAGCCAGTTATTTGGAACATAAAGACAAACATAATATTCATCCGTGCGATATTTGTGGTAAAAGATTTCCTAAAAAGTCCTATTTAGCAGATCATCGTGACGTTCATTCAACCGAAAAGAAATTTAAATGTCCTTACTGCCCAAATACGTATAGATCAAGAACTAATCTAGTAAACCACAAACGAGTTCACACTAACCCGCCGCGTGAGTACAAATGCGACACCTGTGGAAAACCGTTCAAAGACAAGTCAACGATGCTAACACATGTAAAGCTTTTGCACCTTAAAACCCGGGATTTTATGTGTCCTATATGTGGTTTAACTTTCCCATTGAAACAAACACTGGAAAGACACATCAAGGGACACAAACCagaaaaacatgaaattaaaaaaattaaagtcaaaCGTGTCGTTGATTCAATAAACGTAGATTGCGAAATAGCACATTCAGGGGTGTCAGTAAATATGGAAaacttttgcaaaaaatgtaatatttctTTTGCAGACGCCGCCAATTATTTGGAACATAAAGAGAAACACAAGATTCACGCGTGCGATATTTGTGGTAAAAGATTTCCTAAAAAGTCCTATTTAGCAGATCATCGTGACATTCATTCGACAGAAAGGAAATTTAAATGTCCTTACTGCCCAAATACGTATAAAACAAGGACTAACTTAGTAAATCACAAAAAAACTCACACTGACCCGCCTCGTGAATACATATGCGACACTTGTGGAAAAGTGTTCACTGCAAAATCAACGCTGCTAACACATGTAAAGCTTTTGCATCTAAAAACCCGAGACTTTATGTGTCCTATATGTGGTTTAACTTTCCAAATGAAACAAATACTGGAAAGACACATCAAGAGACACGGACCAGGAAAAcatgaatatttttgtttggaaTGCAAAAAGggatacaaaaataaatttagtttaacaaGGCATAATTTAGAGAATCACAATTCAGAAAAGgtAAATGAAGACGATGAAATGCCTCAATATCTGTGTGAAAAATGCACAGCTACACTggcagaattttacaattttaaatctgATTATAAAGATAATGAAAAGTACTTGAAAACTCTTATAAAGAGCATTGTTATTGGTGAAGaagaatttgatattttaaagactTCAGAAAATAAAAGTTCTCCACCAAGTAAAAATAAAGCGGCTGACATCTACAAAGATAATGGAGTTGCTGATCATGTAGAATCAGCATCGTATGCTATAAAAAACTCTGATAATGATGATACAATGGATACACAGTCTATTGATGATAACGATACCTTTGATGAAAGTTTATCCGAAGTTAAACGTCAAGGAAATGAGACCACAGTgacaattttaaatgatttagttCATAAGCGGTCAGATTGGAAAGAATATGTTACAgagaaaacaaacaaatatactTGTGAAGAATGTGGGgatgaatttttattaaaaacaggaTTTATTCAACATATGCGTCAAAAACATTCCCAATCAGATATAGATTTTAAAAAGTGTTCCTCGCAAATTGAAGTCAAACGTGTCGTTAAGTCAATAGATCCAGATTGCGATATAACACCTCTAAGGCAAATAGAAAGTGTGGAAAACTATtgcaaaaaatgtaatattactTTTCCAAACTCGGCTAAATATTTGGAACATAAAGAGAAACATAAAATTCATGTATGCGATATTTGCGATAAAAGATTTACTAAAAAGTGTTATTTAACAGATCATTACGACATTCATTCGACAGAAAGGAAATTTAAATGTCCTTACTGCCCAAATACATATAGAACAAGAAATAACCTAGTAAATCACAAAAGAGTCCACACTAACCCGCGCGAGTACATTTGCGACACCTGTGGAAAAGCCTTCACTGCAAAATCAACGCTGCTAACACACATAAATCTTCTGCACCTGAAAATTCGAGATTGTATGTGCCCTGTATGTGGTTTGATTTTCCCAATGATACAAACGCTGAAAAGGCACCTCAAAACACACCAGTCACAAAgacctaaatatttttgtttggaaTGCAACAAGGGTTACTTAAATAAACGTACTTTGACAAAACACATCAGTGAGAGTCACAATCCGGACGCTGTATTGTTTGCGTGTGATTGTGGAAAGCAGTATACATCAAAATCATATTTACAAAGACATAAAAGGATCCATCATGGCACAAATTGA
- Protein Sequence
- MDQLGVKEDDEFPQYLCEKCTTTLTEFHKFKSDYKNNEEYLKNIKDNEAHLRTLIKSNVIFEKDNDILKISENNSLIPIKNEMNEDDGGADSTMENWDGNGDTMDTKPIVVRDLFNENFSKDIHLKRLLQTEVNDNTAYVKQETEKYSCEECGDEFSMQTGFVKHMRQKHRQPGIDFKKCSSQIGVKPVVNVDCKKTPSRLENFCKKCKICFANAASYLEHKDKHNIHPCDICGKRFPKKSYLADHRDVHSTEKKFKCPYCPNTYRSRTNLVNHKRVHTNPPREYKCDTCGKPFKDKSTMLTHVKLLHLKTRDFMCPICGLTFPLKQTLERHIKGHKPEKHEIKKIKVKRVVDSINVDCEIAHSGVSVNMENFCKKCNISFADAANYLEHKEKHKIHACDICGKRFPKKSYLADHRDIHSTERKFKCPYCPNTYKTRTNLVNHKKTHTDPPREYICDTCGKVFTAKSTLLTHVKLLHLKTRDFMCPICGLTFQMKQILERHIKRHGPGKHEYFCLECKKGYKNKFSLTRHNLENHNSEKVNEDDEMPQYLCEKCTATLAEFYNFKSDYKDNEKYLKTLIKSIVIGEEEFDILKTSENKSSPPSKNKAADIYKDNGVADHVESASYAIKNSDNDDTMDTQSIDDNDTFDESLSEVKRQGNETTVTILNDLVHKRSDWKEYVTEKTNKYTCEECGDEFLLKTGFIQHMRQKHSQSDIDFKKCSSQIEVKRVVKSIDPDCDITPLRQIESVENYCKKCNITFPNSAKYLEHKEKHKIHVCDICDKRFTKKCYLTDHYDIHSTERKFKCPYCPNTYRTRNNLVNHKRVHTNPREYICDTCGKAFTAKSTLLTHINLLHLKIRDCMCPVCGLIFPMIQTLKRHLKTHQSQRPKYFCLECNKGYLNKRTLTKHISESHNPDAVLFACDCGKQYTSKSYLQRHKRIHHGTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -