Bgla030282.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294053.1:26296690-26304329[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.7e-05 0.00095 20.4 1.4 2 23 184 205 183 205 0.97 2 17 6.6e-05 0.0038 18.5 1.6 1 23 211 233 211 233 0.99 3 17 5.2e-05 0.003 18.8 4.1 1 23 239 261 239 261 0.98 4 17 1.3e-05 0.00072 20.8 0.3 1 23 267 289 267 289 0.98 5 17 5.9e-05 0.0034 18.7 4.8 1 23 295 317 295 317 0.99 6 17 8.7e-05 0.0049 18.2 0.5 1 23 323 345 323 345 0.97 7 17 3e-05 0.0017 19.6 0.9 3 23 353 374 352 374 0.93 8 17 0.004 0.23 12.9 2.4 1 23 380 402 380 402 0.94 9 17 0.0045 0.26 12.8 0.5 3 23 496 516 494 516 0.96 10 17 0.00089 0.051 15.0 4.7 1 23 522 544 522 544 0.97 11 17 2.1e-05 0.0012 20.1 5.1 1 23 550 572 550 572 0.98 12 17 6.1e-06 0.00034 21.8 0.2 2 23 579 600 578 600 0.97 13 17 0.0023 0.13 13.7 5.1 1 23 606 628 606 628 0.98 14 17 3.1e-05 0.0018 19.6 2.1 1 23 634 656 634 656 0.98 15 17 4.4e-05 0.0025 19.1 3.1 3 23 664 685 663 685 0.96 16 17 0.00014 0.0078 17.5 3.7 1 23 691 713 691 713 0.99 17 17 2.4e-05 0.0013 19.9 1.8 3 23 721 741 720 741 0.97
Sequence Information
- Coding Sequence
- atgGAGTCTctagattttgaaaatatatgtaGATTATGTCTAGATGAAAGTCCAACTAGAGAATTAAGTGTTAAACATAAAAGTTTGGAAGTAGATTACTATGTTATGCTGAATTATTGTGCTTCTTTACaggcCAATCTTAACGACAGTTTACCAactaaaatgtgtaaaaaatgtgaaaatgtATTAgtaaaaagttacaaatttcGCAATGCAGTCATAAAAAGCGATACAAAGTTAAAAGAAATGTTAGAAtcaaagaacaatgttaacacgcaaaaaaacaatgaaaacgCAGAAGAAAAAGatacagaaataaaaattgaaagtgATTTTGAAAATGATGATAATGATAAAAGTTTTGATGATTATTTAGATGAGGACGACAAACCTTTAAAACCTCCCTCACAAAATAATTCTGAACAAAGACCCAACCCAATGGATCTAGTTAAGGTAGAATGTGAACCAAAAGGTGAAACagatgaaccaaaaattaagacaaaaaggaaaaaatatagGAAGAAACCAAGAAAAGATGATGAACCATTACAGTGTGACTTGTGCGGAAAATCATTTCAAAAGAAAGGTTATTTAAGGCAACACAGGCTAACACACAATACAGAAAAACCATATCAGTGTCAAATTTGTGGTAAACGGTTTAAAATGATGGGAAGTTTATCTGAACATAAAAAACGACATTCagaagCCAAACCACACGAATGTAACGTATGCCACAAACGTTTCACGATGGTCGGATACTTGACCGACCACATGCGCACGCACACGGACGAACGGCAGTACGTCTGCTCTTACTGCGGCAAAGCTTTCCTGCAAAATTTCAACCTGCTGATCCACATCAGGATTCATACGGGTGAAAAGCCATACGAATGTGACGTTTGCCACAaaagATTCCGACAGGAGTCTACCAGGAGGTCGCATCAGAGAACCCACACCGGAGAGAAACCGCATTCGTGCAACGAGTGCGGAAAATCATTTGCTGCCGTACCGGCCCTCAGAAAGCACAAACGCATTCATGAACCTGCTGCCGAAAACATGTGTCAAATTTgtcagaaaatttttaaagacaAGGAAAATTTGAGTCGACATATACtGTTTAACCACACTAAGGATAAGAACTTTGAATGCATTTTATGCCACAGTTCATTCAGTTCAAGTAGAAATTTGAAGGATCACCTTTTAACACATTCCAATGAACGCCCTGAAGTGTGCAACCTATGCGaaacagataaaaaattaaaagatataatACAAACCATAGAAAATACTTCACTACCTGATACAGATGTAAAAACTGAAGAGATCAAAGTAGAAGATgataataattatgaaaattttgataactgtTTGGAACCTGAAAATGACATAACCGATGAACCATCAAATTCTATAAACATCGAaccaaaaaaacaaagaaagaaAAGAGTCGTGAAGAATAAGGAGAAAATCGAAGACAAGCCTTTGGACTGTAATATATgcggaaaaacatttttaaaactacCCTATTTAAGACAGCATAAAGAGACTCATAACACAGAGAGACCATACCAATGTCCCATATGTGGTAAACAGTTTAAAACATTGTGCACTTTTTCATATCACAAAAAACTACATTCAGACGAAAAGAAGCACAAATGCGAAATCTGCCAAAAGAAATTCGTCACGAAAGGCTACCTTACCGACCACATGCACACACATACAGACAAGCGCACAGTGGTCTGTTCATTCTGCGGAAAATCATTCAAAGGAAATTATAACTTGTCGGTACATGTTAGAATTCATACAGGCGAGAAGCCATTTGAATGTGACTTATGCAACACGAAATTCAGGCACGAGTCTACCAGAAATCAACATCGTAGGACCCACACCGGCGAAAAACCATACTCTTGTAATGAGTGTGGTAAATCTTTCGCCGGGTGTTTGTCCTTAACGAAACACAAGCGAGTACATGCTGCCGAAGCGGAAAATATGTGCCATATCTGCCAGAAAATATTTAAGgagaaagaaaattttaatcgaCATATGCtgtCTAATCATTCAAAAGAAAAGAATTTCAAATgccatatttgtttaaattcttttacctcaagtcaatatttaaaaaatcacattttaacGCATTCCAtagaaaaatctgaaatttgtaACATATGCAGTAaaggctttaaaacaaaaaggtATTTGAGTAAACATATGCAATATCATttaaaacaacaacaacaaccaGATGACTTTAAtccaaataaaatatag
- Protein Sequence
- MESLDFENICRLCLDESPTRELSVKHKSLEVDYYVMLNYCASLQANLNDSLPTKMCKKCENVLVKSYKFRNAVIKSDTKLKEMLESKNNVNTQKNNENAEEKDTEIKIESDFENDDNDKSFDDYLDEDDKPLKPPSQNNSEQRPNPMDLVKVECEPKGETDEPKIKTKRKKYRKKPRKDDEPLQCDLCGKSFQKKGYLRQHRLTHNTEKPYQCQICGKRFKMMGSLSEHKKRHSEAKPHECNVCHKRFTMVGYLTDHMRTHTDERQYVCSYCGKAFLQNFNLLIHIRIHTGEKPYECDVCHKRFRQESTRRSHQRTHTGEKPHSCNECGKSFAAVPALRKHKRIHEPAAENMCQICQKIFKDKENLSRHILFNHTKDKNFECILCHSSFSSSRNLKDHLLTHSNERPEVCNLCETDKKLKDIIQTIENTSLPDTDVKTEEIKVEDDNNYENFDNCLEPENDITDEPSNSINIEPKKQRKKRVVKNKEKIEDKPLDCNICGKTFLKLPYLRQHKETHNTERPYQCPICGKQFKTLCTFSYHKKLHSDEKKHKCEICQKKFVTKGYLTDHMHTHTDKRTVVCSFCGKSFKGNYNLSVHVRIHTGEKPFECDLCNTKFRHESTRNQHRRTHTGEKPYSCNECGKSFAGCLSLTKHKRVHAAEAENMCHICQKIFKEKENFNRHMLSNHSKEKNFKCHICLNSFTSSQYLKNHILTHSIEKSEICNICSKGFKTKRYLSKHMQYHLKQQQQPDDFNPNKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -