Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294048.1:10738488-10740876[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.1e-05 0.004 18.4 1.3 1 23 160 182 160 182 0.99

2 16 3.2e-07 1.8e-05 25.8 0.6 1 23 188 210 188 210 0.96

3 16 2.4e-07 1.4e-05 26.2 2.3 1 23 219 241 219 241 0.99

4 16 0.00095 0.054 14.9 4.6 1 23 247 269 247 269 0.98

5 16 5.7e-05 0.0033 18.7 0.3 1 23 275 297 275 297 0.97

6 16 4.6e-06 0.00026 22.2 1.4 1 23 303 325 303 325 0.98

7 16 0.00014 0.0078 17.5 5.8 1 23 331 353 331 353 0.98

8 16 1e-05 0.00059 21.1 3.1 1 23 361 383 361 383 0.98

9 16 0.00011 0.0062 17.8 3.2 1 23 391 413 391 413 0.99

10 16 0.00034 0.019 16.3 0.4 1 23 419 441 419 441 0.95

11 16 5.6e-05 0.0032 18.8 4.3 1 23 447 469 447 469 0.98

12 16 0.04 2.3 9.8 0.0 1 23 475 497 475 497 0.95

13 16 0.00052 0.029 15.7 6.4 1 23 503 525 503 525 0.96

14 16 0.0016 0.089 14.2 0.1 1 23 531 553 531 553 0.97

15 16 1.8e-05 0.001 20.3 0.9 1 23 559 581 559 581 0.97

16 16 0.0023 0.13 13.7 3.4 3 23 589 610 587 610 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.1e-05	0.004	18.4	1.3	1	23	160	182	160	182	0.99
2	16	3.2e-07	1.8e-05	25.8	0.6	1	23	188	210	188	210	0.96
3	16	2.4e-07	1.4e-05	26.2	2.3	1	23	219	241	219	241	0.99
4	16	0.00095	0.054	14.9	4.6	1	23	247	269	247	269	0.98
5	16	5.7e-05	0.0033	18.7	0.3	1	23	275	297	275	297	0.97
6	16	4.6e-06	0.00026	22.2	1.4	1	23	303	325	303	325	0.98
7	16	0.00014	0.0078	17.5	5.8	1	23	331	353	331	353	0.98
8	16	1e-05	0.00059	21.1	3.1	1	23	361	383	361	383	0.98
9	16	0.00011	0.0062	17.8	3.2	1	23	391	413	391	413	0.99
10	16	0.00034	0.019	16.3	0.4	1	23	419	441	419	441	0.95
11	16	5.6e-05	0.0032	18.8	4.3	1	23	447	469	447	469	0.98
12	16	0.04	2.3	9.8	0.0	1	23	475	497	475	497	0.95
13	16	0.00052	0.029	15.7	6.4	1	23	503	525	503	525	0.96
14	16	0.0016	0.089	14.2	0.1	1	23	531	553	531	553	0.97
15	16	1.8e-05	0.001	20.3	0.9	1	23	559	581	559	581	0.97
16	16	0.0023	0.13	13.7	3.4	3	23	589	610	587	610	0.97

Sequence Information

Coding Sequence: atgGAGACCAATGTATCTGAATTTCTAACTGATGAAGAGACTGAATCCACAGACAAAGAAAATAGCACTTCTTCAAATGATGGAAGTGATGAGGAAATTGAAGAAAATGGAATTaaaggaaataatattttaccttTAGAAGATATATGCCTTGAAGAAAGTAAAGGTGTGCCCTCAGAACCCCTGAACACCATACTGGCTAATACAAATCCAAATGTTAGTGAGGAAAGTATTGGATTGGAACCCCTGAACAGCCAACTGGCTGATACAAAGCCAGAGGCCGCTGTAGAAGGTAAATATGTGCCCCCAGAACTCCGGAACAGCCAACAGGCTGACACCAGGCCAAATGTCGGCGTAAAAGAAGAACTTCCAAGTAATTATTTAGATGTCAACCTGGAAGAAGGagataatgaaataaaatatgaatatgatAGCTCTTCAGATGCTACTTACGAACCCtacaaaaaacctaaaaaatacaaatgttacGTTTGCTCGAAAGTTTTTCCAAAACACGCCGCTTTAAGAGAACACACCCGAATACATCttgaggaaaaactattcatcTGTGCCGAATGCGGAAAGAGTTTTACAACCAAACAGAATTTGAACAGACACGCACTTTCTCATGGTGAAACTTCTGAGGAGAAAAACTATCAGTGCCACATGTGTCCGAAGGCCTTTGGACGAAAATACTCGCTGCAACTGCACATCCGCACTCACAGTGGTGAAAAGCCGTACCATTGCGACGTGTGCGGCAGATGTTTTTCCACCGTGGGCATCCTGAAAAGACACATGCACGTTCACAGCGAAGTGAAGCCGTTTTCTTGCTCGTTGTGCGACGTCACGTTCACATCAGTTAGTGCTTTGAACAAACATACTTTGATACATACTGGGGAGAAGCCCCACGTTTGCTCGTACTGCGAAAAAAGCTTCACTGCCAAGGGTGGCTTGAAGAGACACATTCTGACACACACAGgtGAAAAACCATTCAAATGTAAAGAATGCGACCACTGTTACACCACGGGCGAAAGCCTGAAGAAACATATGCTCAGTCATGGCCACGGCGAAGTTCAGTCGCACACTTGCGAAGAATGTTATAAACCATTCATTtccaaagaaaaattaaagaaacacATTAAAACACACGATCCAAAGACCAAGACAAATTATCAGTGTAAGTATTGCGATTTGGAGTTCCCCGACCAATGTCGCCTCAGAAAACATTTGCAGATGCACGCCGGTCCAAAGCCTTACATCTGCATCTACTGCCAAAAAATATTCACCGGGCCTAGCAGCCTGAAAATGCATTTACGGTTGCATAGAGACGATAGGCCGTTCAAATGTGAATATTGCGATAAAACTTTCGGCCGGAGAAACGTTTTGAACAGGCACTTGCATAAACATAGTGGTGATAAGCCCTATATTTGCGAAATTTGCAATGACGCGTTCAGCGAAAAAGCGTTGTTGGAAGATCATAATATAATCCACAACGAGGAACGGCCACATGCCTGTACTTATTGCGGTAAACGGTTTTTCAAGAAGCACCATCTGCTGCTGCATATTCTGGTACATACGGAGGAGCGGCCGCATGAGTGTCTGATTTGCCAGAAATTGTTTCCTGATGGTGCTGCTTTGGAAAAACATATGATAGTCCATAATGGTGACAAGCCTTTCGCATGTCCGTTTTGTGAAAAAAGGTTCTCGAAAAAGGATAATATGTCGGTCCACGCACGTACACATAGCGGAGTTAGGCCATTTGGTTGCTTGTATTGTGAGAATAGGTTCAACCAAAAAGTGCACTTAAAGAAACACGTAAGGCGCACGCATAAAGGTCAGCCGTATATTGATCTTGATCCGCAGTAG
Protein Sequence: METNVSEFLTDEETESTDKENSTSSNDGSDEEIEENGIKGNNILPLEDICLEESKGVPSEPLNTILANTNPNVSEESIGLEPLNSQLADTKPEAAVEGKYVPPELRNSQQADTRPNVGVKEELPSNYLDVNLEEGDNEIKYEYDSSSDATYEPYKKPKKYKCYVCSKVFPKHAALREHTRIHLEEKLFICAECGKSFTTKQNLNRHALSHGETSEEKNYQCHMCPKAFGRKYSLQLHIRTHSGEKPYHCDVCGRCFSTVGILKRHMHVHSEVKPFSCSLCDVTFTSVSALNKHTLIHTGEKPHVCSYCEKSFTAKGGLKRHILTHTGEKPFKCKECDHCYTTGESLKKHMLSHGHGEVQSHTCEECYKPFISKEKLKKHIKTHDPKTKTNYQCKYCDLEFPDQCRLRKHLQMHAGPKPYICIYCQKIFTGPSSLKMHLRLHRDDRPFKCEYCDKTFGRRNVLNRHLHKHSGDKPYICEICNDAFSEKALLEDHNIIHNEERPHACTYCGKRFFKKHHLLLHILVHTEERPHECLICQKLFPDGAALEKHMIVHNGDKPFACPFCEKRFSKKDNMSVHARTHSGVRPFGCLYCENRFNQKVHLKKHVRRTHKGQPYIDLDPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -