Bgla007654.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294045.1:1928829-1932788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.012 0.7 11.4 3.7 1 23 21 43 21 43 0.98 2 20 9.7e-07 5.5e-05 24.3 3.1 1 23 49 71 49 71 0.97 3 20 0.48 27 6.4 3.7 2 23 82 103 81 103 0.96 4 20 1.7e-06 9.6e-05 23.5 0.2 1 23 109 131 109 131 0.96 5 20 0.0039 0.22 13.0 3.3 1 21 137 157 137 158 0.93 6 20 0.007 0.4 12.2 0.3 2 23 172 194 171 194 0.91 7 20 0.027 1.5 10.3 0.8 1 23 202 224 202 224 0.93 8 20 4e-06 0.00023 22.4 1.3 1 23 230 252 230 252 0.97 9 20 2.5e-05 0.0014 19.9 0.6 1 23 258 280 258 280 0.95 10 20 0.98 56 5.4 0.3 1 21 286 306 286 307 0.85 11 20 4.9e-05 0.0028 18.9 4.8 2 23 390 411 390 411 0.97 12 20 3.5e-05 0.002 19.4 1.3 1 23 417 439 417 439 0.97 13 20 7.9e-06 0.00045 21.4 1.2 1 23 459 481 459 481 0.98 14 20 9.5e-07 5.4e-05 24.3 0.3 1 23 487 509 487 509 0.96 15 20 0.35 20 6.8 1.7 1 21 515 535 515 536 0.89 16 20 0.0029 0.16 13.4 0.6 2 23 550 572 549 572 0.91 17 20 0.025 1.4 10.4 2.9 1 23 580 602 580 602 0.96 18 20 8.3e-07 4.7e-05 24.5 1.8 1 23 608 630 608 630 0.96 19 20 8.4e-07 4.8e-05 24.5 0.5 1 23 636 658 636 658 0.95 20 20 0.21 12 7.5 0.1 1 20 664 683 664 685 0.91
Sequence Information
- Coding Sequence
- ATGAAATACGAGAATATAGAGAGAGGAATCAAAACTGAAAAAGCTGCAAAAAGATCATCTTACACGTGTGGAAAATGCTCAAAAAAATTTGCTTGCAAACAAAATCTCGTGAAACATGAAAAAGTTCATACTGGAGAAAGACCATTTGTCTGCGATCATTGCAAAAAATCGTTCAAATCAAAAAGTAACCTAATAACTCACGAACGTgcgcataaaatattaaaatccaaTAGCAAGAATTTAACTTGCGGAAAATGTTCAAAACAATTAACCTGCAAACAAAATCTTAAACAACATGAAAGAGTTCATACTGGGGAAAGACCATTTGTTTGTGGTGTGTGTGGAAAAGGGTTCAAATCACAAAGTAACTTGACAACTCATGGAGTCACGCATACCGGGGAAAAACCATATTGCTGCTTGCTTTGTGGACAATGCTTCACCTTAAAAGATACTTTAAATCGACACGAAAAAATATGTACTATAAAGAAAccgaaacaaaaaataactgGAACTCAATGTGATGAATGTGGTGTTACTTACCAGACCAATGAAGGCTTAATTAGGCATAATTATCGAAAACACAATAACAAtcctaaaaaaacctttttgtgCGACATTTGTGGCAAAAATTTATCCAGTTACGATTCTTTAAAGTTTCATAAAAGAGCCCACATTGGGTTTAAACCGCACGAGTGCGCTATGTGTCCCAagaaatttactaaaaaagaaGATCTGAAGGAACACATAAGGGTGCATACAGGCGAAAGGCCTTTTCTTTGTTCGTTTTGTGGAAAAGGGTTTACCCAAAGGGGTCCTCTTAGAACCCATTTAAGAATACATACTGGGGAAAGACCATATAAATGTGCTACATGCAGTGAAGGTTTTATTTCGAAAAGTGTTCGAGATTCTCATTTAAAATCTTGTAACGAACCTTTAATAGATGACTTTAGCAGCTGTAAAACCAAAATTAAGTCTGAGAAGATTGACACAGAAACCAAAATCAATGTTCCTATCAAAAATTCTTCTGATccaaaactcaaaactttaataaaacgGGAGGTCATGGTAGATGGTTTCAACGGCTACTCTATGTCTGAGATTATAGACCCAGAATCCGATACAGCCGTAGAAAACTCCTCTTCAGATGTATTAATCAACAAACCAAATGTGTGCGATATATGTTCAAAAAGATTTACTtttaaacataaccttaaagaACACAAAAGAACACATACCGGCGAAAAACCATTTACTTGTCAATTTTGTGAAAAACCATTCATGTCaaaaggtaatttaaaaaaacacgaaCGTGCACATGTAGTCAACACAGCTGCAGAAACTTCTCCTCCTCCAAAAATGACAAGTAACAAGCCATATGTTTGTGAAATTTGTTCAAAAGAATTTGCAAACAACCAAAACCTGAGACATCATGAAAAGGTACACACTGGCGAAAGACCATTTGTTTGTGGTGAATGTGGAAAAGGTTTTAAGTCACAGAGCAACTTAAAAACTCATGGAGTTACTCATAGCGGAGAAAAACCGCATCGCTGCCTGCCTTGTGGACAACGCTTTACTTTGAAACATTCTTTAGTTAACCACGAGAAAAGATGTCCTGTAAAAATGCCGAAACCGAAAGTTACAGGGACTCAGTGCTTTGAGTGTGGTGTAACGTACAGGACTAATGAAGGATTGATCAGACATAATTACCGTAAACATaacaaaaatcccaaaaaaacgtATTTGTGTGATATCTGCGGCAAAAATTTATCCAATTGTGATTCTTTAAAGTTTCACAAAAGATCCCATATAGGATTTAAGCCACATGCATGCACTATATGTCCCaagaaatttacaaaaaaggaGGACCTTAAGGAACATATGAGAGTACATACTGGAGAAAGGCCATTCCTTTGTTCTTATTGTGGAAAAGGATTTACTCAAAGAGCTTCTCTTAGAATCCATTTAAGAATTCACACTGGAGAAAGACCGTATAAATGTTCTAGATGCAGTGAAGGGTTTATTTCTAAAGGGGTGCTTGATGCTCATAGCAAATCTTGTATTGTCAGATAG
- Protein Sequence
- MKYENIERGIKTEKAAKRSSYTCGKCSKKFACKQNLVKHEKVHTGERPFVCDHCKKSFKSKSNLITHERAHKILKSNSKNLTCGKCSKQLTCKQNLKQHERVHTGERPFVCGVCGKGFKSQSNLTTHGVTHTGEKPYCCLLCGQCFTLKDTLNRHEKICTIKKPKQKITGTQCDECGVTYQTNEGLIRHNYRKHNNNPKKTFLCDICGKNLSSYDSLKFHKRAHIGFKPHECAMCPKKFTKKEDLKEHIRVHTGERPFLCSFCGKGFTQRGPLRTHLRIHTGERPYKCATCSEGFISKSVRDSHLKSCNEPLIDDFSSCKTKIKSEKIDTETKINVPIKNSSDPKLKTLIKREVMVDGFNGYSMSEIIDPESDTAVENSSSDVLINKPNVCDICSKRFTFKHNLKEHKRTHTGEKPFTCQFCEKPFMSKGNLKKHERAHVVNTAAETSPPPKMTSNKPYVCEICSKEFANNQNLRHHEKVHTGERPFVCGECGKGFKSQSNLKTHGVTHSGEKPHRCLPCGQRFTLKHSLVNHEKRCPVKMPKPKVTGTQCFECGVTYRTNEGLIRHNYRKHNKNPKKTYLCDICGKNLSNCDSLKFHKRSHIGFKPHACTICPKKFTKKEDLKEHMRVHTGERPFLCSYCGKGFTQRASLRIHLRIHTGERPYKCSRCSEGFISKGVLDAHSKSCIVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -