Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294045.1:1547477-1549646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.83 47 5.6 3.8 1 23 17 39 17 39 0.96

2 19 4.9 2.8e+02 3.2 0.0 3 23 49 70 47 70 0.86

3 19 3.3e-06 0.00019 22.6 0.9 1 23 75 97 75 97 0.99

4 19 0.8 46 5.7 0.3 7 23 111 128 108 128 0.88

5 19 1.6e-07 9e-06 26.8 2.7 1 23 133 156 133 156 0.98

6 19 0.00017 0.0094 17.3 3.1 2 23 166 188 165 188 0.95

7 19 2.8e-06 0.00016 22.9 0.2 1 23 193 215 193 215 0.99

8 19 2.7e-06 0.00015 22.9 0.8 1 23 221 243 221 243 0.98

9 19 9.4e-06 0.00053 21.2 0.8 1 23 249 272 249 272 0.97

10 19 0.21 12 7.5 3.8 1 23 308 330 308 330 0.96

11 19 1.5 83 4.9 0.0 3 23 340 361 338 361 0.90

12 19 2.9e-07 1.7e-05 25.9 1.3 1 23 366 388 366 388 0.99

13 19 0.22 13 7.4 0.8 7 23 406 423 403 423 0.94

14 19 1.4e-06 7.9e-05 23.8 3.4 1 23 428 451 428 451 0.98

15 19 0.29 17 7.0 9.1 2 23 461 483 460 483 0.95

16 19 8.4e-06 0.00048 21.3 0.3 1 23 488 510 488 510 0.98

17 19 1.2e-06 7e-05 24.0 1.3 1 23 516 538 516 538 0.98

18 19 2.5e-06 0.00014 23.0 0.8 1 23 544 567 544 567 0.97

19 19 8.7e-07 4.9e-05 24.4 0.7 1 23 573 595 573 595 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.83	47	5.6	3.8	1	23	17	39	17	39	0.96
2	19	4.9	2.8e+02	3.2	0.0	3	23	49	70	47	70	0.86
3	19	3.3e-06	0.00019	22.6	0.9	1	23	75	97	75	97	0.99
4	19	0.8	46	5.7	0.3	7	23	111	128	108	128	0.88
5	19	1.6e-07	9e-06	26.8	2.7	1	23	133	156	133	156	0.98
6	19	0.00017	0.0094	17.3	3.1	2	23	166	188	165	188	0.95
7	19	2.8e-06	0.00016	22.9	0.2	1	23	193	215	193	215	0.99
8	19	2.7e-06	0.00015	22.9	0.8	1	23	221	243	221	243	0.98
9	19	9.4e-06	0.00053	21.2	0.8	1	23	249	272	249	272	0.97
10	19	0.21	12	7.5	3.8	1	23	308	330	308	330	0.96
11	19	1.5	83	4.9	0.0	3	23	340	361	338	361	0.90
12	19	2.9e-07	1.7e-05	25.9	1.3	1	23	366	388	366	388	0.99
13	19	0.22	13	7.4	0.8	7	23	406	423	403	423	0.94
14	19	1.4e-06	7.9e-05	23.8	3.4	1	23	428	451	428	451	0.98
15	19	0.29	17	7.0	9.1	2	23	461	483	460	483	0.95
16	19	8.4e-06	0.00048	21.3	0.3	1	23	488	510	488	510	0.98
17	19	1.2e-06	7e-05	24.0	1.3	1	23	516	538	516	538	0.98
18	19	2.5e-06	0.00014	23.0	0.8	1	23	544	567	544	567	0.97
19	19	8.7e-07	4.9e-05	24.4	0.7	1	23	573	595	573	595	0.99

Sequence Information

Coding Sequence: atgtgttacAAAGATCAATTTAAGGAAGCATCAAACCAAGATGGTTCATACAATTGTCGAATATGCCACAAATATCTTGTAGATGTAAATAGATTCAGAAAACATATGTATAATCATAGAGTGCGAGAAGTTAACCCTATAATTTGTCCTGTATGTAATTATATACAACCAAGCAAATTGGCATTAGAAAAGCATACAATTGACGTGCACAGTGGTATAGAATACAAGTGTGATAAATGTGACAAGATTTATTTTAACCCATATGGTTTGAAAGCCCATCAACAAACTCATGAACCAAATTACTTTGAAATCTTGTGTATACTATGCAACGGGaaaaaatttaacagtaaaagttcatttaaaatGCATGTGGCCGGAAAGCACAGTGGTAACGTTTATAAGTGTGATATTTGCGGAAAAGTCTTCAGCAGTCAACATTATCTCAAGACGCACCAAACTACTGTCCATGATGATTCTTATATCAGACCAACTGTTGAATGCAGTGAATGTGGTAAGAAATGTTCAAGCAAACCTCATTTAAAGTCTCATTACTTAAGTATACACGAGGGCAGGAAATATGTATGTTCTTTATGTGGTAAAGTGATGACCACAAATGAATCACTTAAGGCGCACATGAGGATACATAACAAAGAAAGGCCTTTCAGTTGTCCGCATTGTGATAAgtcatttgtggcaaaaaagGGGCTAACGGCCCACTTACTTACCCATACGAAGGAAAAACCACATGTGTGTGAGTTTTGTGGAAAATCTTATTCGCAACGGACTCCATTGATAATTCACATGAAGACTGCCCATGAGAAGGAGAGACCattAGAAAATTCCGCTGAAGCAGACAGattaagaattttgaaaatgtgtTTAAAAGATCAATATAAGGCAGCATTAAACCAAGACGGTTCATATACCTGTCAAATATGCCACAAATATCTTATAGATGACTATAGGTTTAGAAAACACATGTATGATCATAGAGTGCGAGAAATTAATCCTATAATTTGTCCTGTATGTAATAGAATACAGCCTACAAAATTGGCATTAGAAAAGCATACAATAGAAACGCACAGTGGTATAGAATACAAGTGTGATAAATGTGACAAGATATTTTCCTATCCATATGGTTTAAAAAGACATCAAGAGACACATGAACCCAGACCAGAAGCCAATGACTTTGAAATCTTTTGTATTCTGTGCAATGGAaagaaatttaacaaaaaaagttcatttaaaagTCATGTGGAGACTAAGCATAGTGGTAAGACTTATAAGTGTGATATTTGTAGCAAAGTTTTCTCCACTCAACATTATCTTAAAACACACCAAACTACTGCGCATGATGATTCTTATATCAGACCAACTTTAGAATGCAGTGAATGTGGAAAAATATGTTCTAGTAAAAATCATTTAAGGTGCCATCACAAAAGAGAACATGAAGGAAGGACATTTGTATGTTCCTTATGTGGTAAAATGATGACCAGCAATGAGTCACTAAAGGCCCACATGAGGATACATAACCAAGAAAGGCCTTTCAGTTGTCCGCATTGTGATAAgtcatttgtggcaaaaaaaGGACTAAATCTGCATATACGTACTCATACGAAGGAAAAGCCACATGTTTGTGAATTTTGTGGCAAATCTTATTCGCAACGATCTCCTTTGATAATCCACATGAAGACTGTACATGAGAAGGAGAGACCGTTTAAATGTTCCATTTGTAATAAGGGATTTGTTGTTAACAGTTTATTGAATTCACATATGAAAATGCATACTGAATGtaaataa
Protein Sequence: MCYKDQFKEASNQDGSYNCRICHKYLVDVNRFRKHMYNHRVREVNPIICPVCNYIQPSKLALEKHTIDVHSGIEYKCDKCDKIYFNPYGLKAHQQTHEPNYFEILCILCNGKKFNSKSSFKMHVAGKHSGNVYKCDICGKVFSSQHYLKTHQTTVHDDSYIRPTVECSECGKKCSSKPHLKSHYLSIHEGRKYVCSLCGKVMTTNESLKAHMRIHNKERPFSCPHCDKSFVAKKGLTAHLLTHTKEKPHVCEFCGKSYSQRTPLIIHMKTAHEKERPLENSAEADRLRILKMCLKDQYKAALNQDGSYTCQICHKYLIDDYRFRKHMYDHRVREINPIICPVCNRIQPTKLALEKHTIETHSGIEYKCDKCDKIFSYPYGLKRHQETHEPRPEANDFEIFCILCNGKKFNKKSSFKSHVETKHSGKTYKCDICSKVFSTQHYLKTHQTTAHDDSYIRPTLECSECGKICSSKNHLRCHHKREHEGRTFVCSLCGKMMTSNESLKAHMRIHNQERPFSCPHCDKSFVAKKGLNLHIRTHTKEKPHVCEFCGKSYSQRSPLIIHMKTVHEKERPFKCSICNKGFVVNSLLNSHMKMHTECK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -