Bgla019330.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294048.1:43117866-43120178[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00024 0.014 16.8 0.8 1 23 32 54 32 54 0.98
2 20 0.046 2.6 9.6 2.4 1 21 60 80 60 81 0.95
3 20 0.4 23 6.6 4.5 3 23 136 157 136 157 0.94
4 20 1.3e-05 0.00077 20.7 2.6 2 23 164 185 163 185 0.96
5 20 0.00012 0.0066 17.8 0.4 1 23 316 338 316 338 0.98
6 20 0.0013 0.071 14.5 3.8 1 23 344 366 344 366 0.97
7 20 2.7e-05 0.0015 19.8 0.9 1 23 372 394 372 394 0.98
8 20 0.018 1 10.9 0.2 1 20 400 419 400 423 0.90
9 20 3.8e-06 0.00022 22.4 2.5 1 23 428 450 428 450 0.98
10 20 0.002 0.11 13.9 1.8 1 23 458 480 458 480 0.97
11 20 0.0012 0.068 14.6 0.8 1 23 485 507 485 507 0.99
12 20 0.00011 0.0062 17.8 0.4 1 23 513 535 513 535 0.99
13 20 0.00018 0.01 17.1 4.7 1 23 544 566 544 566 0.98
14 20 8.9e-07 5e-05 24.4 2.1 1 23 572 594 572 594 0.98
15 20 0.00015 0.0085 17.4 2.2 2 23 601 622 600 622 0.97
16 20 2.2e-05 0.0013 20.0 0.8 1 23 628 650 628 650 0.96
17 20 6.4e-05 0.0036 18.6 0.5 1 23 656 678 656 678 0.99
18 20 8.7e-05 0.005 18.2 0.8 1 23 684 706 684 706 0.98
19 20 0.00012 0.0067 17.7 0.5 1 23 712 734 712 734 0.97
20 20 0.00012 0.0068 17.7 1.5 1 23 740 762 740 762 0.95

Sequence Information

Coding Sequence
ATGCGTATTTTAAAACAACATATGTGCAATAGTAGCCTAGTCAACAATAAATCACTTGCAACTAGTCCAAACAACAATCTACCACTGAAAGaatttacttgtgatatttGCGAAAGATCGCTTAAAACCGAAGCCAAActaataaaacataaacaaacacaCACCGGTAAGAAACTGTTCACATGCAATGCTTGTTTAAGATCATTTACTCTGAAACGTAATCTCAGTCAACATATCTGCTACATTGAAGATAAGCCAGATTTTGTGAATGAACAGGATCTTGATAAGTTGACTGAAAATTTAGAATCGATTATTAAAACTGAGGATGAAAATTATGAATTAAATGCACTTCCATCAACCTCAAAGCAGGTTACTACGAAGAACGTTAAAACAAAAAGAGTTGGGTGTCATAAATGTGCCAAGTGGTTTAATACCAAAACAAATTTAATCAGACATAATAAGCAGAAGCATTCTAAGAGGAGGCCATTAAAGTGCAAAGTTTGTCACAAGGCATTTGCATCAAATCGAAGCTTAAAAAGACATTTGATGTTGCATGCTGAAGAAAATGAGCCAGATTTACTTGATGATAACTTGGTTGCGAATGAAGAAATAAAGAGAGAAGATTCGGAATTGAATCCAGAACAATCATTAGATTTAAATCCTGAAAAGTCAAATAGCTCAGGGAAGGACACAGGTCAGTTAATAGGCCTGGAATTGAACCTAGAAGAATCAACAGGCGTGAAATTGAATGCAGACAAATCGACAAGCTTGAATTTAAACTCAATTCAGTCAGTAGACTTGAATTTAAACTCAAAGTTGTCAACAGACCTAAATTCACCAGATTGGAAGTTGGTGCCAGAACAGGTAACTGACATGGGATTGAATCCACAGCTGGTAGATGACATGAATAAAAAGAGCATAGAAAATATGGTGATAAATAAAGTATACACATGCGAAATATGCGAAAAAACTTTCATAGAAAAAAAGGGATTAATCCTACATAATAGAATGCATACTGGAGAAAAGCCATTCAATTGTAACATCTGTAAAAAAGCATTTAGTTTGAAATGTAACTTGGATAGGCACAAAGTGACACATACAGGCGTAAAAGCCTACAAATGCGACGTTTGCAGGGTAGCCTATACAACCAAAGGCAACTTGATGAGACATAAAAGGCTTCATACTGGCGAGAAACCGTTCGAATGTCCCGTTTGTAGAGATTCGTTTACTTTCCAAGAAGAACTGCTTCGACATGGCGTAAATAGCCACAATAAAAAACCGTATCCTTGTACAATTTGCAACAAATcgtttacttataaaaaaagtctgATATTGCACAAGAGAAAGCATACTCGTACAGGCTTTAAACCGTTCTCGTGTACGTTTTGTAGCTTGTCATTTGCGGACAAAACGAGTTTGTTTACGCACGAACTGAAACACACCGCGTCGCTGTACAAATGTAGGTTTTGCAACCGGTCGGTTAATAGCAAGGGGTATTTGGTTATACATGAAAGAATTCATACTGGTGAAAAACCATATGAGTGTAATATTTGCGGAAGTCTTTTTGTATCTCAGCAAACACTTAACCAACACAGAAGGGTGCACTCGGGGGAACCAATGGAGAAGCTATTTTCGTGCCCTGTATGTAAAAAACGGTTTACTTGCAACAGTagcctaaaaaaacatttacaaatgCATAGTGGTAAAAGTCCACATAAATGCGGAGTTTGCGGCAAGAACTTTAGTTATAAAGAAAACTTGTCTAAACACATTAAAATACATGACGGCAAAAATTCTATCAGTTGTACCGTGTGCAATAAACTATTTTCCTCCAAAAAGCACTTGGTAGAACACACCAGAATTCACACTGGTGAGCGACCATTTTTATGTACAGTTTGCGGAAAGTCATTCGCTTATAAATCGGTTTTGGTGAAACACAACCGGACGCATACAGGGGAGAGGCCCTATAAATGTGACCTTTGTGACAAAGCCTATATCTCTGTATCGTATCTGATAGATCACAAACGGAAACATACCGGAGAACGACCATATGTGTGTGCTATTTGTCAGAAAACCTTTGCTTCGAGATGGGAAATGCACGCACATAGAATGACTCACTCCAGCATAAAACCATTCAACTGCGATATTTGTGGAAGAGGGTTTATTGCTAGATACAGTTTCAAAAAACATATCCAGTTACATAATAAAGGAAACATGTTCATCTGTGACATTTGCGATTTGTCATTTATACATAAACATGAACTAATTAAACACGTGACTGAACATAATAAATCTGCACCGGAAAAACCTTAA
Protein Sequence
MRILKQHMCNSSLVNNKSLATSPNNNLPLKEFTCDICERSLKTEAKLIKHKQTHTGKKLFTCNACLRSFTLKRNLSQHICYIEDKPDFVNEQDLDKLTENLESIIKTEDENYELNALPSTSKQVTTKNVKTKRVGCHKCAKWFNTKTNLIRHNKQKHSKRRPLKCKVCHKAFASNRSLKRHLMLHAEENEPDLLDDNLVANEEIKREDSELNPEQSLDLNPEKSNSSGKDTGQLIGLELNLEESTGVKLNADKSTSLNLNSIQSVDLNLNSKLSTDLNSPDWKLVPEQVTDMGLNPQLVDDMNKKSIENMVINKVYTCEICEKTFIEKKGLILHNRMHTGEKPFNCNICKKAFSLKCNLDRHKVTHTGVKAYKCDVCRVAYTTKGNLMRHKRLHTGEKPFECPVCRDSFTFQEELLRHGVNSHNKKPYPCTICNKSFTYKKSLILHKRKHTRTGFKPFSCTFCSLSFADKTSLFTHELKHTASLYKCRFCNRSVNSKGYLVIHERIHTGEKPYECNICGSLFVSQQTLNQHRRVHSGEPMEKLFSCPVCKKRFTCNSSLKKHLQMHSGKSPHKCGVCGKNFSYKENLSKHIKIHDGKNSISCTVCNKLFSSKKHLVEHTRIHTGERPFLCTVCGKSFAYKSVLVKHNRTHTGERPYKCDLCDKAYISVSYLIDHKRKHTGERPYVCAICQKTFASRWEMHAHRMTHSSIKPFNCDICGRGFIARYSFKKHIQLHNKGNMFICDICDLSFIHKHELIKHVTEHNKSAPEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-