Bgla030284.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:26318626-26337658[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7e-08 9.9e-07 29.8 0.3 1 23 10 32 10 32 0.98
2 16 7.2e-06 0.00041 21.6 1.0 1 23 38 60 38 60 0.98
3 16 9.1e-05 0.0052 18.1 0.3 1 23 66 88 66 88 0.97
4 16 0.0001 0.0057 18.0 2.3 1 23 94 117 94 117 0.97
5 16 0.00023 0.013 16.8 4.8 1 23 132 154 132 154 0.98
6 16 1.7e-05 0.00098 20.4 4.1 1 23 315 337 315 337 0.99
7 16 8.6e-05 0.0049 18.2 2.6 1 23 509 532 509 532 0.96
8 16 8.8e-06 0.0005 21.3 1.6 1 23 538 560 538 560 0.99
9 16 2.1e-06 0.00012 23.3 4.2 1 23 566 588 566 588 0.98
10 16 7.6e-05 0.0043 18.3 2.2 1 23 594 616 594 616 0.97
11 16 4.7e-05 0.0027 19.0 3.3 1 23 622 644 622 644 0.98
12 16 5.4e-06 0.00031 22.0 0.4 1 23 650 672 650 672 0.98
13 16 2.1e-05 0.0012 20.1 1.9 1 23 678 700 678 700 0.99
14 16 2.2e-06 0.00013 23.2 0.4 1 23 706 728 706 728 0.99
15 16 0.00046 0.026 15.9 2.9 1 23 734 756 734 756 0.99
16 16 1.1e-05 0.00064 20.9 3.6 3 23 777 797 776 797 0.98

Sequence Information

Coding Sequence
ATGCGCACGCACACAGGTGAAAAGCCATACATGTGTTCCTATTGCGGAAAATCATTCACCACTTCCGGAAATTTGGCCATTCATATCCGGATCCACACCGGGTACATGCCCTTCGAGTGCGATGTGTGCCAGAAAAAGTTTACCCAAGAATCTGGATTGGTGTCACATAAGCGCACTCACACGGgagaaaagttatttttctgCTCTTATTGTGGGAAATCTATGGCCACTGCGTCGAGTTTGATTATTCATACGCGGATTCATACCGGAGAGTTGCCCTATAAGTGTGAAATTTGTGACAAGGGGTTCACTAACTCGGGGTGCAAGAACACCCATATaagatacgtTCATCAAAAGATTCAAAGATGGCCGGGAGGACCAAGAGAAAAGACATTTGAATGCCATATATGCCACAACCGATTTACAACCAACCAGAGCCTAAAAGAGCATATTATCAAGCATACTGTAGAACGACCTGAAACTTATAAAAGTCCTAAAAAGGAATTGAGTGTTACACATAAAATTTTAGACGTAGATTATTATTCCATGTTGAATTATTGTGCTTCAGTACAGgcTAAATCGAACGATAGTTTACCATccaaaatgtgtaaaaaatgtGAACATTTATTAGTAAAGCATTACAAGTTTCGCAATTCTATAATAGAAACAGATACAAGATTAAAAGAAATTCTTGaatcaaagaaaaatatttttctacaagaTCTTATTTTAATAACAGAAGAAAATTtagaagtaaaaaaagaagaaaatgaaGATAATAGTAATGATAATTTTGAGGATACCATTGCACATGAATCTACTGAAGAGGACCCACCCATACCTCTAGATCTTGTCAAAATAGAATGTGAAACTGAAAGACCCAAGAAAAGGACGAAAAAACGGAAGCCTTacaagaaaaaacataaaaatgaagATGCGACGTATCAATGCGAAACATGCAGTAaaatatttacgaaaaaaagcAACTTTTATCAACATCAGCAAACTCATAATGATGAAAGACCATTTCAGTATAACAGCACTTTTAGGGAATTAAGCGATAAACATAGATCTTTAGATAtggattattattttatgttgaaCTGTTGTGCTCCATTACAGGCAAATAACGACGATAATTTACCAACCAAGATGTGTAAAAAATGTGAAGGTCTATTAGTAAAAAACTACAAGTTCCGTAACTCGCTCATAGAAACAGACACAAAGTTAAAAGAAATGTAtgaattaaagaaaaacatgcAAATAAAAGATGacacagaaaaagaaaatatcgaAATAAAAGTTGAAGATGATATTTATATAGATAACGATAATTTGGATAACACTGAATCTGaaaatgatgatgatgaaaaaccattaaaaatttattcaaaaacgtctAATACAATAAATTCCTTagacactattaaaattgaggGTGAGGAGGAAACACCTAAGACCAAAGtcagaaaaagaaaaagtaaagcTAAAATAGAGTATGATACTGATGATTGTGAAGAAACATTTCAATGTGATATATGCTctaaatcattttcaaaaaaaatatatttaaatcaacACAAGCAAAACACACATAACACTGATACTCCATATCAATGTCAAATATGTGGAAAACAAGTAAAAACTTATTCATCTCTAACAAGGCACAAAGAGACTCATTCAGaagaaaaaaattacgaATGTAAAATATGCCATAAGAAATTCTCAACATCAGGCTACCTAACAGCGCATATGCACATACATTCTGGAGTGCAGCCGCACATATGCTCCTACTGTGGAAAATCGTTTTTGAAAAACGCCAACTTACAAACGCATACAAGGATACACACAGGCGAAAAACCATTTGAATGTGACATCTGTCACAGAAAATTTCGACAGGAtattaacctcaaaatacacAAGCGAACTCACACGGGCGATAAACCGTACACCTGCGAAATTTGCGGCAAATCGTTTGCTGATTACAGTTACATGAACATTCACAACCGAATACACAAAGGCGAATCCCCGTATAAATGTCAAGTCTGTTCCAAGGGATGGCGAACGAAGAGCGACCTAACCAAACACATGAGGCGCCATACCGGCGAGAAAAACTATAAATGCAACATATGTGGAAAAGCATTTGCCAACTCcttttatataaaagtccatCTTCGAATACATAATGGAGAGTATCCTTTTAAATGCGAGCTTTGTCCGAAAGCCTGTAGGACGAAGCTGGATCTTGATAAACATCTGAAAAAGCACACAGACCCTTCGTTTGTGAATGATGACGATTGTAAGGATATTGGGGAAAGACCTGAAGCTTGCACATTCTGTAATAAATCATTTCGAACAAAACGTGGTCTGAAGAAGCacttaaaaacacatttaaaagaataa
Protein Sequence
MRTHTGEKPYMCSYCGKSFTTSGNLAIHIRIHTGYMPFECDVCQKKFTQESGLVSHKRTHTGEKLFFCSYCGKSMATASSLIIHTRIHTGELPYKCEICDKGFTNSGCKNTHIRYVHQKIQRWPGGPREKTFECHICHNRFTTNQSLKEHIIKHTVERPETYKSPKKELSVTHKILDVDYYSMLNYCASVQAKSNDSLPSKMCKKCEHLLVKHYKFRNSIIETDTRLKEILESKKNIFLQDLILITEENLEVKKEENEDNSNDNFEDTIAHESTEEDPPIPLDLVKIECETERPKKRTKKRKPYKKKHKNEDATYQCETCSKIFTKKSNFYQHQQTHNDERPFQYNSTFRELSDKHRSLDMDYYFMLNCCAPLQANNDDNLPTKMCKKCEGLLVKNYKFRNSLIETDTKLKEMYELKKNMQIKDDTEKENIEIKVEDDIYIDNDNLDNTESENDDDEKPLKIYSKTSNTINSLDTIKIEGEEETPKTKVRKRKSKAKIEYDTDDCEETFQCDICSKSFSKKIYLNQHKQNTHNTDTPYQCQICGKQVKTYSSLTRHKETHSEEKNYECKICHKKFSTSGYLTAHMHIHSGVQPHICSYCGKSFLKNANLQTHTRIHTGEKPFECDICHRKFRQDINLKIHKRTHTGDKPYTCEICGKSFADYSYMNIHNRIHKGESPYKCQVCSKGWRTKSDLTKHMRRHTGEKNYKCNICGKAFANSFYIKVHLRIHNGEYPFKCELCPKACRTKLDLDKHLKKHTDPSFVNDDDCKDIGERPEACTFCNKSFRTKRGLKKHLKTHLKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-