Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:1748598-1750373[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5e-05 0.0028 18.9 0.1 1 23 64 86 64 86 0.97

2 16 1.2e-05 0.0007 20.8 3.3 1 23 165 187 165 187 0.98

3 16 1.7e-05 0.00094 20.4 5.7 1 23 201 223 201 223 0.98

4 16 0.0012 0.068 14.6 1.9 1 21 229 249 229 250 0.95

5 16 4.4e-08 2.5e-06 28.5 2.3 1 23 257 279 257 279 0.98

6 16 5e-07 2.8e-05 25.2 5.0 1 23 285 307 285 307 0.97

7 16 7.7e-06 0.00043 21.5 3.9 1 23 313 335 313 335 0.98

8 16 6.1e-05 0.0035 18.6 4.8 1 23 341 363 341 363 0.97

9 16 9.3e-06 0.00053 21.2 1.7 1 20 369 388 369 391 0.95

10 16 2e-06 0.00011 23.3 8.6 1 23 397 419 397 419 0.97

11 16 4.1e-07 2.3e-05 25.5 2.3 1 23 425 447 425 447 0.98

12 16 4.6e-07 2.6e-05 25.3 2.8 1 23 453 475 453 475 0.97

13 16 3.6e-06 0.00021 22.5 0.9 1 23 481 503 481 503 0.98

14 16 0.14 7.9 8.1 7.7 1 23 509 531 509 531 0.98

15 16 3e-07 1.7e-05 25.9 5.0 1 23 537 559 537 559 0.99

16 16 0.015 0.87 11.1 2.4 5 23 568 587 565 587 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5e-05	0.0028	18.9	0.1	1	23	64	86	64	86	0.97
2	16	1.2e-05	0.0007	20.8	3.3	1	23	165	187	165	187	0.98
3	16	1.7e-05	0.00094	20.4	5.7	1	23	201	223	201	223	0.98
4	16	0.0012	0.068	14.6	1.9	1	21	229	249	229	250	0.95
5	16	4.4e-08	2.5e-06	28.5	2.3	1	23	257	279	257	279	0.98
6	16	5e-07	2.8e-05	25.2	5.0	1	23	285	307	285	307	0.97
7	16	7.7e-06	0.00043	21.5	3.9	1	23	313	335	313	335	0.98
8	16	6.1e-05	0.0035	18.6	4.8	1	23	341	363	341	363	0.97
9	16	9.3e-06	0.00053	21.2	1.7	1	20	369	388	369	391	0.95
10	16	2e-06	0.00011	23.3	8.6	1	23	397	419	397	419	0.97
11	16	4.1e-07	2.3e-05	25.5	2.3	1	23	425	447	425	447	0.98
12	16	4.6e-07	2.6e-05	25.3	2.8	1	23	453	475	453	475	0.97
13	16	3.6e-06	0.00021	22.5	0.9	1	23	481	503	481	503	0.98
14	16	0.14	7.9	8.1	7.7	1	23	509	531	509	531	0.98
15	16	3e-07	1.7e-05	25.9	5.0	1	23	537	559	537	559	0.99
16	16	0.015	0.87	11.1	2.4	5	23	568	587	565	587	0.95

Sequence Information

Coding Sequence: ATGGAAGGTGTAAAAATCAAAGAAGAGAAGAACGAATATGGTACTAGGGTAGTTGAAGATAAGTTagtaattacaaaaaaacaagaaCAATTGATACCAGATGAAGAACCAATGAAAACTGAATTCATAGAACATTCTgaggaagaaaaagaagaaaaaccaATAATAGATAAAGAATTAAAACCACTCTTTGATTGCACTTACTGTGAAGAAGCATTTAAACTAGAATCTGATCTAAATGTGCATATCCTTACACATAATGATGCtgagttaaatattttaaaaataaagagggAAGACGATGAAATAAAAGTTAAAGATGAATCAGTTGAAATGGaaatccaaataaataaaaatgaattcgTTCCTGGTGAAGATCAAATAAAAGTTGACGTTATTGAACATGCATTATATgataatgaatttaaaaatattaaagttgaagaagaagaagaagataaacTAATGTTTTATGAAGAAATAAAGCCATTTTATGTTTGTGCTTATTGTAAAAAGACTTTTAAGCTAAAATCTGACTTAAAAGTGCATATTCACAGACACAATGAAAATCACATGCAGcgacaaactaaaaataaaaatcatacttGCTCGTACTGCAAAAAATCTTTTGGATTTGcttcacatttaaaaatacatattcgaAGGCACACTGGGGAGAGACCTTATAGATGTTCGTGTTGCAACAAATCATTTGTAGATAAAACAGGTTTAAAAACTCACATTAAAATTCGCACTGGGGAGAAGCCCCATAAATGTCCTTTCTGTGACAAATCCTTTGGAACTGCATCAAATTTAAGAACACATATTCGCACGCACACTGGGGAGAAGCCCCATAAATGTTCTTATTGCGACAAATCTTTTAAAACTGcatcacatttaaaaatacatattcagTTGCACACTGGGGAAAAGCCCCATAAATGTTCTTATTGCAACAAATGTTTTACAGCTGCATCGCAATTAAAAGCACATATTGGCACGCACACTGGGGAGAAGCCTCACGAGTGTTCTTATTGCGACAAATCTTTTGGATCTGAATCAcatttaaaaatgcattttcgaTTGCACACTGGGGAAGGTCCCCATAAATGTCCTTATTGCGACAAATCTTTTGGATATGcttcacatttaaaaatacatattccaTTGCACAGTGGGAAGAAGCCCCATAAATGTCCCTATTGCAACAAATGTTTTACACGAGCAGATcatttaaaaacacatattcgaTTCCACACTGGGGAAAAGCTCCATACATGTTCTTATTGCAGCAAATCTTTTAACGGTGCATCCAATTTAGTAAGACACATTCGCACGCACACTGGGGAGAAGCCCCATAAATGTTCTTACTGCGACAAATCTTTTGGAACTGCATCAAATTTAAAAGAACATATTCGATTTCACACTGGGGAGAAGCCCTATATATGTTCTTATTGCAACAAATCTTTTGCATATGCATCAAATCGGGTATCACATATTCGCACGCACACTGGGGAGAAGCCCCATAAATGTTCGAAGTGCAACACATCTTGTTTAACCAAATCacttttaaaaacacatttccGCATTCACACTGGGGAGAAGCCCTATAAATGTTCTTATTGCGACAAATCTTTTGGAACTACATCACATTTAAAACAACATTTACGCACGCACACTGGGGAGAAGCCCCACAAATGTTATTGCAACATATCTTTTGGAACTACATCACTTTTAAAACAACATTTGCGCAAGGCCCATCTATCAAATAATTAa
Protein Sequence: MEGVKIKEEKNEYGTRVVEDKLVITKKQEQLIPDEEPMKTEFIEHSEEEKEEKPIIDKELKPLFDCTYCEEAFKLESDLNVHILTHNDAELNILKIKREDDEIKVKDESVEMEIQINKNEFVPGEDQIKVDVIEHALYDNEFKNIKVEEEEEDKLMFYEEIKPFYVCAYCKKTFKLKSDLKVHIHRHNENHMQRQTKNKNHTCSYCKKSFGFASHLKIHIRRHTGERPYRCSCCNKSFVDKTGLKTHIKIRTGEKPHKCPFCDKSFGTASNLRTHIRTHTGEKPHKCSYCDKSFKTASHLKIHIQLHTGEKPHKCSYCNKCFTAASQLKAHIGTHTGEKPHECSYCDKSFGSESHLKMHFRLHTGEGPHKCPYCDKSFGYASHLKIHIPLHSGKKPHKCPYCNKCFTRADHLKTHIRFHTGEKLHTCSYCSKSFNGASNLVRHIRTHTGEKPHKCSYCDKSFGTASNLKEHIRFHTGEKPYICSYCNKSFAYASNRVSHIRTHTGEKPHKCSKCNTSCLTKSLLKTHFRIHTGEKPYKCSYCDKSFGTTSHLKQHLRTHTGEKPHKCYCNISFGTTSLLKQHLRKAHLSNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -