Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294052.1:26899614-26901467[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00017 0.0096 17.2 2.7 1 23 85 107 85 107 0.97

2 19 3.5e-06 0.0002 22.6 4.9 1 23 113 135 113 135 0.97

3 19 0.00016 0.0091 17.3 0.3 1 23 141 163 141 163 0.98

4 19 1.5e-07 8.7e-06 26.8 2.3 1 23 169 191 169 191 0.99

5 19 0.0054 0.31 12.5 1.1 1 23 197 219 197 219 0.95

6 19 9.4e-05 0.0053 18.1 3.2 1 23 225 247 225 247 0.96

7 19 0.035 2 10.0 4.2 1 23 253 275 253 275 0.98

8 19 5.3e-06 0.0003 22.0 0.8 1 23 281 303 281 303 0.98

9 19 0.00044 0.025 15.9 1.5 1 23 309 331 309 331 0.98

10 19 0.00071 0.04 15.3 1.7 1 23 337 359 337 359 0.99

11 19 0.00031 0.018 16.4 1.3 1 23 365 387 365 387 0.97

12 19 5.5e-06 0.00031 21.9 1.4 2 23 394 415 394 415 0.98

13 19 5.4e-05 0.0031 18.8 6.6 1 23 421 443 421 443 0.96

14 19 2.9e-06 0.00017 22.8 0.1 3 23 451 471 449 471 0.98

15 19 2.4e-06 0.00014 23.1 1.0 1 23 477 499 477 499 0.98

16 19 0.00015 0.0085 17.4 4.0 1 23 505 527 505 527 0.98

17 19 0.011 0.61 11.6 2.4 1 21 533 553 533 555 0.93

18 19 2.6e-05 0.0015 19.8 1.1 1 23 561 583 561 583 0.97

19 19 0.0019 0.11 13.9 0.6 1 21 589 609 589 610 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00017	0.0096	17.2	2.7	1	23	85	107	85	107	0.97
2	19	3.5e-06	0.0002	22.6	4.9	1	23	113	135	113	135	0.97
3	19	0.00016	0.0091	17.3	0.3	1	23	141	163	141	163	0.98
4	19	1.5e-07	8.7e-06	26.8	2.3	1	23	169	191	169	191	0.99
5	19	0.0054	0.31	12.5	1.1	1	23	197	219	197	219	0.95
6	19	9.4e-05	0.0053	18.1	3.2	1	23	225	247	225	247	0.96
7	19	0.035	2	10.0	4.2	1	23	253	275	253	275	0.98
8	19	5.3e-06	0.0003	22.0	0.8	1	23	281	303	281	303	0.98
9	19	0.00044	0.025	15.9	1.5	1	23	309	331	309	331	0.98
10	19	0.00071	0.04	15.3	1.7	1	23	337	359	337	359	0.99
11	19	0.00031	0.018	16.4	1.3	1	23	365	387	365	387	0.97
12	19	5.5e-06	0.00031	21.9	1.4	2	23	394	415	394	415	0.98
13	19	5.4e-05	0.0031	18.8	6.6	1	23	421	443	421	443	0.96
14	19	2.9e-06	0.00017	22.8	0.1	3	23	451	471	449	471	0.98
15	19	2.4e-06	0.00014	23.1	1.0	1	23	477	499	477	499	0.98
16	19	0.00015	0.0085	17.4	4.0	1	23	505	527	505	527	0.98
17	19	0.011	0.61	11.6	2.4	1	21	533	553	533	555	0.93
18	19	2.6e-05	0.0015	19.8	1.1	1	23	561	583	561	583	0.97
19	19	0.0019	0.11	13.9	0.6	1	21	589	609	589	610	0.95

Sequence Information

Coding Sequence: ATGAAAACAAATCCAAATGAGTTTATCGAAAAACTGGAACcagaagaaaaatatttaaaacctattATTACTCTGGATAACAAACCAAAATTAAGGGACAGGAAGAAAATCGTTGAAACATGTGAAATGAAGATTGAAATCGAAGAACATGATTTAAAAGCTGAAACTAATGAtgaaatatacaataataatataacgccCAGACCAAAACGCGTGAAGAAGGAATTACAAGAGAAACCTCTGGAAAAGCCTTTTATCTGTGAATATTGCGACAAAAGTTGTCCAACAAAATATGATTTTGACAAACATTTAATCAAACATTCTGAAGAGAGGCCATTTCATTGTTCATACTGTGACAAGGCCTTCAAACGAAAAAACAACCTAAACTCTCATGTTCGGTACCATACAGGAAAGCACGTTTATAAATGTTCACTGTGTGACAAAGGATTTCCTGGAGCCGATAAATTGAAAATCCATTTTCAAAGTCACACAGGCGAGAGGCCATTCGAATGTTcctattgcaaaaaaaagtacTCCTCAAATGATAATTTAAAAGTACATATCCGTACACATACTGGTGAAAAACCACACGAATGTCCCTATTGTAAGAAGGGGTTTTTACGTAAATCTGACTTAAACTTTCACATTGCCATACACACTGGAGAAAGAAACTTTCATTGCtcaatatgtaataaaaaatttataagaaaaaaagaattaacTTACCACCTTCTCGCCCATAAAGGGGTGAAACGCTTCGAATGTGTAGAATGTAAGGAAAAGTTTTTACATAACTATCGGTTGAACTATCACATGCGTAAACATGCTGTCAAAAAACCGTTCGAATGTTCGGTGTGTGGTAAGGGATATACCACAAAGGGAACTTTCGAATATCACATTAAGACCCATACAAAGGACAAACCTTTTGAGTGTTTGGAATGCAGTAAAAGGTTTCAGTTTAGGCAGTTGTTGAATATTCACGTTCGCACACATTCTGCTCTGAAGGCCTTTAAATGTACAGAATGCCCAAAAGCCTATCTTTTCAAGAGTAGACTTAATCTCCATATGAAAACACATTCGGGTGAAAGACCCTTTGAATGCTTAATATGTAGCAAAACATTcgtatttaaaaagtatttaaacgTGCATGCTTACACTCATAGTACTGAAGTAACAGAAAAATGTCCACGATgtgataaaatgtttaaaacaaagGATGTTTTAAGAGTACACCTTCGCAGCCACTTGGAGCAAAGGCCGCATATATGCACGATTTGTAATAAAGGATTTAAGCAGCAATGTCATTTAAAGAAGCATATTCTAATACATGAAGATCAAAAACAATATGGTTGTCCATTTTGTGATCGGGCATTTACTCAGAGCGGACAATTGGAAATACACATCAGAGTACACACGTTAGAAAAACCATTCGAATGTGCAGACTGCGGTAAAAAATACTCCAGAAAGAATTTGCTAAAGGACCATATGTATATGCACAGAAACGAGAAACCGTTTGAGTGCTTAAAGTGTAACAGAACTTTCATGCACAATCGTTATTTGACCGAACACATGCGTGAGCACAATAATAAAAGACCCTACGAGTGTGCAGAATGCGGTAAACGATTTAACACTAGGCAAATATTAAAACAGCATGTTAAATGTCACTTGAAAGTTAAACCATTTGCTTGTGGTCATTGTGATAAGAAATACACGGTAAGACCTAATCTTCTAATTCATATGCGAAATCATACTGGAGAGAAACCTTATGAGTGTGCCGAGTGCTCAATGCGTTTTTCCGACAGACATAAATTAATATATCATGTTCGGTCTTGCCCAAAAGAAGCTGGAAACTAG
Protein Sequence: MKTNPNEFIEKLEPEEKYLKPIITLDNKPKLRDRKKIVETCEMKIEIEEHDLKAETNDEIYNNNITPRPKRVKKELQEKPLEKPFICEYCDKSCPTKYDFDKHLIKHSEERPFHCSYCDKAFKRKNNLNSHVRYHTGKHVYKCSLCDKGFPGADKLKIHFQSHTGERPFECSYCKKKYSSNDNLKVHIRTHTGEKPHECPYCKKGFLRKSDLNFHIAIHTGERNFHCSICNKKFIRKKELTYHLLAHKGVKRFECVECKEKFLHNYRLNYHMRKHAVKKPFECSVCGKGYTTKGTFEYHIKTHTKDKPFECLECSKRFQFRQLLNIHVRTHSALKAFKCTECPKAYLFKSRLNLHMKTHSGERPFECLICSKTFVFKKYLNVHAYTHSTEVTEKCPRCDKMFKTKDVLRVHLRSHLEQRPHICTICNKGFKQQCHLKKHILIHEDQKQYGCPFCDRAFTQSGQLEIHIRVHTLEKPFECADCGKKYSRKNLLKDHMYMHRNEKPFECLKCNRTFMHNRYLTEHMREHNNKRPYECAECGKRFNTRQILKQHVKCHLKVKPFACGHCDKKYTVRPNLLIHMRNHTGEKPYECAECSMRFSDRHKLIYHVRSCPKEAGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00244499;
90% Identity: -
80% Identity: -