Bgla028168.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294052.1:24927832-24931339[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 5.2e-06 0.00029 22.0 0.2 2 23 108 129 107 129 0.96
2 20 1.8e-05 0.001 20.3 0.4 1 23 134 157 134 157 0.98
3 20 0.0029 0.17 13.3 4.1 1 23 166 189 166 189 0.97
4 20 5.3e-06 0.0003 22.0 2.0 1 23 196 218 196 218 0.97
5 20 2.7e-05 0.0015 19.8 4.2 1 23 224 246 224 246 0.97
6 20 0.0017 0.099 14.1 1.5 2 23 264 285 263 285 0.96
7 20 0.00066 0.038 15.4 0.6 2 23 292 313 291 313 0.96
8 20 1.8e-05 0.001 20.3 4.1 1 23 319 341 319 341 0.97
9 20 0.00037 0.021 16.2 2.0 3 23 349 369 347 369 0.95
10 20 2.6e-06 0.00015 23.0 1.1 1 23 375 397 375 397 0.96
11 20 0.00045 0.026 15.9 1.2 1 23 403 425 403 425 0.97
12 20 0.0002 0.011 17.0 2.1 2 23 432 453 431 453 0.96
13 20 1.5e-06 8.2e-05 23.7 1.2 1 23 459 481 459 481 0.98
14 20 1.7e-05 0.00096 20.4 0.5 1 23 487 509 487 509 0.96
15 20 0.00065 0.037 15.4 2.0 1 23 515 537 515 537 0.98
16 20 0.0026 0.15 13.5 1.7 2 23 544 565 543 565 0.97
17 20 0.0003 0.017 16.4 2.7 1 23 571 593 571 593 0.98
18 20 0.0058 0.33 12.4 0.3 2 23 606 628 605 628 0.96
19 20 1.9e-06 0.00011 23.4 1.0 1 23 634 656 634 656 0.98
20 20 0.017 0.98 10.9 8.6 3 23 664 684 662 685 0.95

Sequence Information

Coding Sequence
ATGTCAAAGTATTGTGGAGTAAAGGCTCGGATCGAGCGCattaCCAAAGACCTACTAAACATAAAGATGGATAACATTAAAACAGAACCTGAAGATCCTGAAAACAAACATGCTCTTTTCAtgaattatgaaaatattttaataaaggaTGAAAAAGGGGAGATAGAAGAGAATGACATTAAAAATATTCCTGAAATCCTCCAAAGCCCAgattatattgacataaaaaatataaaatcggaGATAAAGAACGGAGATAGAGAAGACACTGacataaaaacagaaaatactGTTCATGTGAAAGTGGAAGGCAGTAAATGGGTATGTGCAGACTGTGGAAAAACTTTTCGTATCAAAAGCCAGTTAACCTCTCACGTTAAGATACACTCAGAAGAAGAATTTCAATGTGGTATCTGTCCGAAAAAATTTAacgtacaaaaatatttaatcaccCACGTGAAAACTGCGCATGGAAAACTCTCGGTGGAAAGAAAATACGATTGTTCAGAATGTCagcaaaaattcaaatttgaaaaatatttaaacaaacattttaaaactcagCATGGACAAAATTGGAAAAAGTTCGATTGTTCGTTTTGCGAGAAAAAGTTTAATACAAGTGGCAGCTTGAACCGGCATGTTCGGACTCACACAGGAGCAAAACCGTACGCTTGTGATTTTTGTAATAAGAGCTTCAGTCAAAGATGTAGCCTGACAAGACATATCACATCACACACAACAAATAAACCAGAATTATCTGGTCCATCAACCACTAAAGATCTGCTCGTATGTACGCTCTGTCCAGAAAAGTTTACCAGTAGATCCGAGTTAACATGTCACCTTTTAACTCACGCCATAGAAAAACCACTAGAATGTCCTCATTGCGAGTCAACTTTTATCAGTGAAAAGTATTTGAACCAGCACATCCAGTGGCATCTTAAAGATAAACCCCATGAATGTACCCAGTGTGGAAAAACGTTTTCGCTAAAAAGACAGTTGACGAATCATTATCGATTACACACTGATGAGAGGCGCCATCTGTGTGCCTATTGTCCCCAAAAGTTCagagatgtttcttctttaaaaaatcacgAACGACGGCATACCAACGAAAAACCATTTTTGTGTTCATATTGCAATAAACGGTTTATAACGCAGGGCCAGTTAGTTCAGCATATTAAGACTCACACCGGAGTTAAACCTTATGAGTGTTCCTTTTGTCAAAAAAGATTCAGCCAAAGAGTCCAAATGTCAACTCATGTTGAAATACACAACGAAGGCAAAACTCTGGAATGTCCCGACTGCAAGAAAATGTTTCACATGGAAGTCAATCTGAAGCGACATCTTAAGTTTCATACCGGCGACAGTTATTTCGAATGTGCTCATTGTGGCAAAAGTTTCGAACAAAAAAGATTGCTATCTGATCACATAAGAATTCATACAAAAGACAAACCGTATTTGTGTCCTATTTGTGGGTTAAAATTCTCGTATAATTCTGGATTTAACTCACACCTTCGGCAACATAACACCGAGAAAACTTTTGAATGCTCCGAGTGTATTGAAAAGTTCAGTAGTCAAAGACAACTGAAATTGCATTACAGAAGACACACGGGAGATTATCCACTCAGGTGTTCGTATTGCAACCTAGGGTTCCACGTTCAGAGCAAGTTAATTTTACATGTCAGAAGACACACCAATGAAAAACCATTTGAATGCACCTCCTGTGATAAAACCTTCTTCGGTAAATACGAATTAAACAAGCATTCAAAGTCTCACCTTGATTTACCTAAAGGCAAAGGCGTTAAAGAACTCGAGTGCGTTGAATGCGGCAAATGGAGCAAAAATAAGATCAATTTAAGGATTCATATTAAACGGTTTCACTCGGGAGATGCAAAATATAGTTGTTCTTACTGTGATAAAAAGTACGTTGACAAAAGTCAGTTAGTTATACATGTTAGAAAGCATACAGGTGAGAAGCCATATGGGTGTGAGTATTGTAGTAAAAAATGCAGCACCAAAAGCAACTTGAATTGCCATATACGTAGACATCATCAGAAAGATAAGACATCAGAGTCCATAGATCAATGA
Protein Sequence
MSKYCGVKARIERITKDLLNIKMDNIKTEPEDPENKHALFMNYENILIKDEKGEIEENDIKNIPEILQSPDYIDIKNIKSEIKNGDREDTDIKTENTVHVKVEGSKWVCADCGKTFRIKSQLTSHVKIHSEEEFQCGICPKKFNVQKYLITHVKTAHGKLSVERKYDCSECQQKFKFEKYLNKHFKTQHGQNWKKFDCSFCEKKFNTSGSLNRHVRTHTGAKPYACDFCNKSFSQRCSLTRHITSHTTNKPELSGPSTTKDLLVCTLCPEKFTSRSELTCHLLTHAIEKPLECPHCESTFISEKYLNQHIQWHLKDKPHECTQCGKTFSLKRQLTNHYRLHTDERRHLCAYCPQKFRDVSSLKNHERRHTNEKPFLCSYCNKRFITQGQLVQHIKTHTGVKPYECSFCQKRFSQRVQMSTHVEIHNEGKTLECPDCKKMFHMEVNLKRHLKFHTGDSYFECAHCGKSFEQKRLLSDHIRIHTKDKPYLCPICGLKFSYNSGFNSHLRQHNTEKTFECSECIEKFSSQRQLKLHYRRHTGDYPLRCSYCNLGFHVQSKLILHVRRHTNEKPFECTSCDKTFFGKYELNKHSKSHLDLPKGKGVKELECVECGKWSKNKINLRIHIKRFHSGDAKYSCSYCDKKYVDKSQLVIHVRKHTGEKPYGCEYCSKKCSTKSNLNCHIRRHHQKDKTSESIDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-