Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294053.1:1861128-1879019[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.1e-06 0.00035 21.8 2.3 1 23 185 207 185 207 0.99

2 18 1.9e-05 0.0011 20.3 3.9 1 23 213 235 213 235 0.99

3 18 9e-06 0.00051 21.3 1.1 2 23 242 263 241 263 0.97

4 18 7.4e-06 0.00042 21.5 1.0 1 23 269 291 269 291 0.97

5 18 8.7e-08 4.9e-06 27.6 0.3 1 23 297 319 297 319 0.98

6 18 6.2e-05 0.0035 18.6 5.9 1 23 325 347 325 347 0.98

7 18 4.2e-05 0.0024 19.2 0.6 1 23 353 375 353 375 0.97

8 18 1.7e-06 9.4e-05 23.6 7.6 1 23 381 403 381 403 0.98

9 18 0.005 0.28 12.6 3.9 1 23 566 588 566 588 0.97

10 18 0.0003 0.017 16.5 3.5 1 23 594 616 594 616 0.98

11 18 7.3e-06 0.00041 21.5 1.1 1 23 622 644 622 644 0.98

12 18 4.9e-06 0.00028 22.1 0.5 1 23 650 672 650 672 0.98

13 18 2.2e-05 0.0013 20.0 0.6 1 22 678 699 678 699 0.97

14 18 1.1e-06 6.3e-05 24.1 2.4 1 23 872 894 872 894 0.98

15 18 0.00081 0.046 15.1 1.8 1 23 900 922 900 922 0.97

16 18 0.0001 0.0058 17.9 1.9 1 23 928 950 928 950 0.99

17 18 2.4e-06 0.00014 23.1 0.7 1 23 956 978 956 978 0.97

18 18 9.4e-07 5.3e-05 24.3 1.7 1 23 984 1006 984 1006 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.1e-06	0.00035	21.8	2.3	1	23	185	207	185	207	0.99
2	18	1.9e-05	0.0011	20.3	3.9	1	23	213	235	213	235	0.99
3	18	9e-06	0.00051	21.3	1.1	2	23	242	263	241	263	0.97
4	18	7.4e-06	0.00042	21.5	1.0	1	23	269	291	269	291	0.97
5	18	8.7e-08	4.9e-06	27.6	0.3	1	23	297	319	297	319	0.98
6	18	6.2e-05	0.0035	18.6	5.9	1	23	325	347	325	347	0.98
7	18	4.2e-05	0.0024	19.2	0.6	1	23	353	375	353	375	0.97
8	18	1.7e-06	9.4e-05	23.6	7.6	1	23	381	403	381	403	0.98
9	18	0.005	0.28	12.6	3.9	1	23	566	588	566	588	0.97
10	18	0.0003	0.017	16.5	3.5	1	23	594	616	594	616	0.98
11	18	7.3e-06	0.00041	21.5	1.1	1	23	622	644	622	644	0.98
12	18	4.9e-06	0.00028	22.1	0.5	1	23	650	672	650	672	0.98
13	18	2.2e-05	0.0013	20.0	0.6	1	22	678	699	678	699	0.97
14	18	1.1e-06	6.3e-05	24.1	2.4	1	23	872	894	872	894	0.98
15	18	0.00081	0.046	15.1	1.8	1	23	900	922	900	922	0.97
16	18	0.0001	0.0058	17.9	1.9	1	23	928	950	928	950	0.99
17	18	2.4e-06	0.00014	23.1	0.7	1	23	956	978	956	978	0.97
18	18	9.4e-07	5.3e-05	24.3	1.7	1	23	984	1006	984	1006	0.98

Sequence Information

Coding Sequence: atggaGTCTTCTGATTACAAGGGCGTATGTAGAATATGTTTAAAAGGAAAACCGTGCaaagaaatatgtaaaaaacataaaaagctaAAGATAAATTACGTAGACATGATAAACTACTGTGCGTCCATACAgGTTGAATTAACagatattttacctaaaaagaTGTGTAAAAAGTGTGAAGCAGTGCTAGTAAATTtctataaattcaaaaaatcaatgATTGATAATGATACCAAGCTTAAAGAGTGGAGCAGTCAAATCAAAGAAGAGGAAATAAATTTAGATTTGTCATTTAATGATACTAAATTAGAAGTAGTGGAAAACGCAGTAAAAGAGGACCAAGACctgttaaatattaaagtagagTGTGTACTTAATGAAGAACTTCCTATTATTGaagaaGAAGCACCTCCCGAAGAACCCACCAGTGACGCAGATTGTCCTCTGGAAGAAGAAGATGACCGGAGCGCAAGTCCGGAGCCCCCCAGTCCGGATCCGCCCAGCCCAGAGCGCGTGACTCCGGAGAAAACTGCCTTCAAACCAGATCCGAGgTTCCAGTGCGAGGTTTGTGGAAAGTGCTTGAGCAGCAAACGAAATTTAGGAGACCACATGCGAAAACATACCGGGGAGAGACCTTTTCAGTGCGACACGTGCGAAAAGAGGTTCAGGAAGGCGGAACATTTAAACGTTCACAAAAGAACACATACagGCGAAAAACCCATAGAATGCGAAATATGTCAAAAACGGTTCACCCAAATAACAACCCTGAAAAATCACCTGCGGACGCATTCGGGAGAAAAGCCGTTTATGTGCGCCGTGTGCGGGAAATCGTTCTCGCAGTCGACCAGTCTGAAATACCACAGTCGAATCCACACCGGAGAGTTGCCCTACAAGTGCGATCTATGCGGGAAAGGATTCACGAGcccgggaaatttaaatgttCATATGAGattccaCCGTAATGAACGCAACTTCGAGTGTCAGTTGTGCAAAAAGACTTTCGTCACGAGTTCGCATCTGAGTTTGCACATGAAGCACCACAACGGCATCAAGGCGCACCAGTGTTCAGTCTGCGGAAAAGCCTTTGTCAGGGGCAAAACTCTGAAGGACCACATGGTAATCCACACCGGAGAAAAACCGTACCATTGCAAAATTTGCACGAAAAGTTACACGCAGAGTAGCCATTTAAATCGGCATATGAAAACCCATTTGAATCACATCAACACGGCAGGAATTCCGCATTTAAATCAAGGTTTAAGTCAAATTAATCAAATGAACTTAGATATCAATGACATTTTCCCTAGCAAGATATGTAAAAAATGCCACACATTATTGGTCAGTTTGTACCAGTTTCGAAAAGTTATAATTGATAATGATAAGAAGTTAAAAGATAAATGGAAAGAAATTGAGTGCAATCAAAATGACTTATTGAGTGAAAGATGTATAAAAAGTGAAAGCGAGAATGAGGAAATGGGACAGCAAGAAACGGTAAAAGAAGATTACGCAGAAACTGAGGAAAACTACGAAAATTCTCAGCTCAGCGAATTGTCTGAAGGAAATGAAGAAGAAAATATGCAAGTTGAAGAAGAAAatatatacactgtaaaaaatgtttcagCGCAAGCTGAAGGAAATGTAAAAACTGAAGaaaacgacaaaaaattggaagaaaaaaagaaatccgttaaaaaaatatttccgtgCAAAACGTGTAATAAAACGTTCATGCGCAAAGCGACGCTGATCTGTCACTTGAGAAACCACACTGGGGAAAGGCCCTATCATTGTGAAATGTGCCCGAAACAGTTTACGAAGTTGCAGTTGTTAAAAGTACACAAAAGAACGCATACGGgaGAAAGGTCCTTCGAATGTACTATCTgcaacaataaattttcgcaacgTACCGGCCTTAACAACCACATGCGAATTCATACGGGTGAGAAACCTTTCATGTGCGCCATCTGTGGGAAATCTTTCGGACAGGCAACCACCCTTACAAATCACACGAGACGCCACACCGGAGAGCGGCCTTATCAATGCGAATTGTGCAAAAAACAGTTTAATACTTCGTGGTACTTGAAAATTCACATGAGGATATGTTTAAGTAAAAATCCGCTGAAGGAAATCAGTGATTTACACAAAAGGTTAAAagtaaactattattttatgttaaatacTTGCGCATCAATACAGGCTAATATTAATGACAAACTACCaaataaactttgtaaaaaatgtgaaactGCTCTTGTTAATACTTACAAGTTTTGCCTAACTATTATTAAAACTGACaccaaattaaaagaaatatccATAGAAATACCAAACGAAACTGATTTAAACAAGGACACTTTAAAAGAAGAAGCAAATGAGAGAGAAACTGATATTTCAATAAAAGATGAAGATATTTCAATAAAAGATGAAGATTCTGATAACAGttcatttgaaaataataaGGAAACTGAAGATATGCTGGAAAACAACTCAGATACAGATAGTTTGAAAATACagAATAACATCAAACCTAAATGTATAAAATCAGATAAAACAGAAGAAAAAGTTGAAAAACATCTAAAAGGAcgtaaaaagaagaaaataaaagtaaaaaaatcatattcatGTGAAGAATGTGGAAAAACTTTTACTCGAAGGGGAAATCTCTTTTATCATAAGAGGAACCATACTGGCGAAAGACCTTTCGAATGTGATATATGTAAAAGGACTTTTATTCGAGGAAGTCTCCTGCATGTACATAAAAAGCTTCATACaggcGAACGAAACTATGAATGTAAATTTTGCAACAAAAAGTTCGGTCAAATAACGACGCTCAAACTGCACATTCGAATGCACACGGGCGAACGTCCGTTTATGTGCGACGTGTGCGGAAAATCGTTTGCGAGAAACCGCACGCTGAAAAATCACACTTTGGTGCACACTGGCGAAAAACCATACAGTTGTAATATTTGCGGGAAAGGATTTACACAACAGGCGCATGTTCGGAGACATTTGAGCACACACAAGAACATAAAAGAAGAAAATCATTag
Protein Sequence: MESSDYKGVCRICLKGKPCKEICKKHKKLKINYVDMINYCASIQVELTDILPKKMCKKCEAVLVNFYKFKKSMIDNDTKLKEWSSQIKEEEINLDLSFNDTKLEVVENAVKEDQDLLNIKVECVLNEELPIIEEEAPPEEPTSDADCPLEEEDDRSASPEPPSPDPPSPERVTPEKTAFKPDPRFQCEVCGKCLSSKRNLGDHMRKHTGERPFQCDTCEKRFRKAEHLNVHKRTHTGEKPIECEICQKRFTQITTLKNHLRTHSGEKPFMCAVCGKSFSQSTSLKYHSRIHTGELPYKCDLCGKGFTSPGNLNVHMRFHRNERNFECQLCKKTFVTSSHLSLHMKHHNGIKAHQCSVCGKAFVRGKTLKDHMVIHTGEKPYHCKICTKSYTQSSHLNRHMKTHLNHINTAGIPHLNQGLSQINQMNLDINDIFPSKICKKCHTLLVSLYQFRKVIIDNDKKLKDKWKEIECNQNDLLSERCIKSESENEEMGQQETVKEDYAETEENYENSQLSELSEGNEEENMQVEEENIYTVKNVSAQAEGNVKTEENDKKLEEKKKSVKKIFPCKTCNKTFMRKATLICHLRNHTGERPYHCEMCPKQFTKLQLLKVHKRTHTGERSFECTICNNKFSQRTGLNNHMRIHTGEKPFMCAICGKSFGQATTLTNHTRRHTGERPYQCELCKKQFNTSWYLKIHMRICLSKNPLKEISDLHKRLKVNYYFMLNTCASIQANINDKLPNKLCKKCETALVNTYKFCLTIIKTDTKLKEISIEIPNETDLNKDTLKEEANERETDISIKDEDISIKDEDSDNSSFENNKETEDMLENNSDTDSLKIQNNIKPKCIKSDKTEEKVEKHLKGRKKKKIKVKKSYSCEECGKTFTRRGNLFYHKRNHTGERPFECDICKRTFIRGSLLHVHKKLHTGERNYECKFCNKKFGQITTLKLHIRMHTGERPFMCDVCGKSFARNRTLKNHTLVHTGEKPYSCNICGKGFTQQAHVRRHLSTHKNIKEENH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -