Bgla007617.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294045.1:1656875-1664627[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 7.1e-05 0.004 18.4 1.8 1 23 2 24 2 24 0.95 2 24 2e-05 0.0011 20.2 0.5 2 23 30 52 29 52 0.97 3 24 1.3e-05 0.00075 20.7 0.7 1 23 57 79 57 79 0.97 4 24 0.056 3.2 9.3 1.1 1 13 85 97 85 100 0.89 5 24 2.3e-05 0.0013 20.0 0.7 1 23 113 135 113 135 0.97 6 24 0.012 0.71 11.4 6.6 1 23 144 166 144 166 0.98 7 24 7 4e+02 2.7 0.8 3 23 175 192 173 192 0.77 8 24 0.0023 0.13 13.7 0.6 2 23 199 220 198 220 0.98 9 24 1.9e-07 1.1e-05 26.5 0.8 1 23 226 248 226 248 0.98 10 24 0.00011 0.0065 17.8 2.4 3 23 256 276 254 276 0.98 11 24 0.00014 0.008 17.5 0.9 1 19 294 312 294 317 0.91 12 24 2.2e-06 0.00012 23.2 3.9 1 23 322 344 322 344 0.98 13 24 5.5e-05 0.0031 18.8 4.6 1 23 353 375 353 375 0.99 14 24 1.1 60 5.3 0.1 2 23 383 401 382 401 0.79 15 24 0.0051 0.29 12.6 1.0 2 23 419 440 418 440 0.95 16 24 0.03 1.7 10.2 1.1 2 23 446 468 445 468 0.95 17 24 1.3e-05 0.00074 20.7 1.2 1 23 473 495 473 495 0.98 18 24 0.0045 0.26 12.8 2.2 1 19 501 519 501 524 0.93 19 24 1.5e-05 0.00083 20.6 3.5 1 23 529 551 529 551 0.97 20 24 7.5e-05 0.0042 18.4 5.3 1 23 560 582 560 582 0.99 21 24 6.6 3.7e+02 2.8 1.4 5 23 590 608 589 608 0.78 22 24 5.4e-05 0.003 18.8 3.7 1 23 614 636 614 636 0.99 23 24 5.3e-05 0.003 18.8 1.0 1 21 642 662 642 664 0.94 24 24 0.00012 0.0066 17.8 4.4 1 23 670 692 670 692 0.98
Sequence Information
- Coding Sequence
- ATGTTTGTTTGTCCAATTTGCTTCAAAGAATTCAAAACAAGAAGAAAATTAACCAAACACAAAGCACTTCACAAGGCAAGAACAGTTCAATGTCCACAGTGCGATAGAAAATTTAGGCTAAATAGTGAATtaaaagtacacgtaaaaagaaTTCATCTAAATCAGATATTCCCCTGCGAGTTGTgttctaaagtttttaaaggaAAGGATTATCTGATCAAACATATGTACAGCCACGAAAACAAGTTTAGATATCATTGTAAAATATGCGGAAAAGGATTCTACAACAAATTTGAAATCGGACCTCATGAAGACAAAGAACACAAGGGTAAAATGTACACATGTGACGTGTGTGGCAAGTTATTCAAATCTGAATACTATTTAAGAACTCATCAAGTTGTCCACGATCCAAATTATGTGAAGCCAGAATATCATTGCTTACAATGCGACAAAAAATTCACTCACGTTAAGTCCTATAAActgcatttaaaaatacatgaaggattacaaACAAAGCAAGTTTGTTATATCTGCGGTATAAGCGTGAATAAACTAAAAGACCATCTACGAATCCACACCGGAGAACGTCCAGTAAAATGCAGTTTGTGtccaaaaacatttataaacggTAACCATATGGCTGGGCATTTAAGAATGCACAATAATATAAAACCGTACACCTGTAACATGTGCGACAAAACGTTTTCGCAAAAAGGAGCTTTAATTATTCATCAAAGATATCATACTGGTGAGAAGCCATTTGGTTGTGAAATATGCAATAAGCATTTTGTTACGAAAGCTTTGCTCAAAAACCATTCAAAAACTCATGGAGTAtctttaaatgattttaacagTCTAATCCACGAAAACAAGTCTAGGTTTACTTGCGAAGTGTGCGGGAAAGGGTTTTACAACAAGCACGAGTTGATTGCACATGATCAAAAAGAACACAGGGGCAAAATGTACACTTGCGAACTTTGTGGGAAATCATTCAAGTCCAATTACTCACTGACGCATCACAAAGAAACTCACAAACCTGATTACCAAAAGCCCGAATTCCGATGTACTGAGTGTCCGAAGATATATTACCATTCCAAGTCGTTTAAAGTGCACATGAAAACGCATATGGGAAACGACGTGAAGAAACAGTGTAATGTGTGTGGAATTACCGTGGCTAGTTTGGTGAACCATTTGCGAGTACATACAGGAGAACGACCgATTAAAATAGAAGCAtatcttaaagataatttaTGGGTGTGTTTGGTTTGTTTAAAAGAATtcaaaacgaaaagaaaattcCAAAGACACGCAGCGCGTCATAGAGAAAGAACAAAATCCTGCCCACAATGtgataaaaagttccttttAAACAGCGAGATAAGATCCCATATTCGCTATAAGCATATACAAGAAGTCTACACTTGCGAAGTATGTTCGAAGGTGTTCAAAGATAAAAACTACCTAATACAGCACCTGTATAGTCACGAAAACAAATCCCGATTTTTCTGCGAAAAATGTGGAAAAGGCTTCTACAACAAACACGAGTTAAACGGACATGACGACAAAGAACACAAAGGCAAAATGTACACTTGTGACAGATGTGGAAGATCATTTAAGTCAAATTACTCGCTGAGGCATCACAGAGTCATCCATGAGCCGGATTATACAAAACCAGAATTCCAATGCACAGAATGCCCGAAAGTTTATTATCACACGAAATCATTCAAACAACATATGAAGACTCACATAGGCAAAACCAATAAGAAAGTTTGTGATATCTGCGGGATACATGTGGTACATTTAATGGACCACAAACGGATACACACGGGAGAAAGACCATACAAATGCGTCTATTGCCCAAGGACGTTTATCAACAGAACCCACAGGACTAGTCATATGAGAATCCATACCAATGAGAAACCATACGTGTGTAATATGTGTGATAAGAGCTTTTCGCAAAGAGCTGCTTTGGTGGTGCATGAGAGATGTCATACTGGAGAGAAGCCGTTTTGTTGTGATATGTGCGAAAAGTGTTTTGCGTCCAACGCATTGCTTAAAAGTCATGTCAAAACTCACTTACGAACTGTACCTTAA
- Protein Sequence
- MFVCPICFKEFKTRRKLTKHKALHKARTVQCPQCDRKFRLNSELKVHVKRIHLNQIFPCELCSKVFKGKDYLIKHMYSHENKFRYHCKICGKGFYNKFEIGPHEDKEHKGKMYTCDVCGKLFKSEYYLRTHQVVHDPNYVKPEYHCLQCDKKFTHVKSYKLHLKIHEGLQTKQVCYICGISVNKLKDHLRIHTGERPVKCSLCPKTFINGNHMAGHLRMHNNIKPYTCNMCDKTFSQKGALIIHQRYHTGEKPFGCEICNKHFVTKALLKNHSKTHGVSLNDFNSLIHENKSRFTCEVCGKGFYNKHELIAHDQKEHRGKMYTCELCGKSFKSNYSLTHHKETHKPDYQKPEFRCTECPKIYYHSKSFKVHMKTHMGNDVKKQCNVCGITVASLVNHLRVHTGERPIKIEAYLKDNLWVCLVCLKEFKTKRKFQRHAARHRERTKSCPQCDKKFLLNSEIRSHIRYKHIQEVYTCEVCSKVFKDKNYLIQHLYSHENKSRFFCEKCGKGFYNKHELNGHDDKEHKGKMYTCDRCGRSFKSNYSLRHHRVIHEPDYTKPEFQCTECPKVYYHTKSFKQHMKTHIGKTNKKVCDICGIHVVHLMDHKRIHTGERPYKCVYCPRTFINRTHRTSHMRIHTNEKPYVCNMCDKSFSQRAALVVHERCHTGEKPFCCDMCEKCFASNALLKSHVKTHLRTVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -