Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294047.1:53162546-53166970[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4e-05 0.0023 19.2 0.5 2 23 87 108 86 108 0.98

2 17 3.4e-05 0.0019 19.4 1.0 1 23 114 136 114 136 0.98

3 17 3.1e-07 1.8e-05 25.9 1.8 1 23 180 202 180 202 0.98

4 17 0.017 0.97 10.9 4.8 1 21 208 228 208 229 0.91

5 17 2.8e-05 0.0016 19.7 0.3 1 23 263 285 263 285 0.99

6 17 6.4e-05 0.0036 18.6 1.0 1 23 291 313 291 313 0.98

7 17 2.6e-07 1.5e-05 26.1 1.2 1 21 319 339 319 340 0.95

8 17 0.00093 0.053 14.9 0.5 1 23 347 370 347 370 0.97

9 17 2.2e-05 0.0012 20.1 1.9 1 23 370 392 370 392 0.98

10 17 5e-06 0.00028 22.1 1.2 1 23 397 419 397 419 0.97

11 17 1.8e-05 0.001 20.3 1.0 1 23 425 447 425 447 0.98

12 17 2.8e-08 1.6e-06 29.2 1.9 1 23 453 475 453 475 0.99

13 17 1.2e-06 6.7e-05 24.0 1.1 1 23 481 503 481 503 0.98

14 17 9e-05 0.0051 18.1 1.9 1 23 511 533 511 533 0.96

15 17 0.02 1.1 10.7 5.2 1 23 539 561 539 561 0.99

16 17 3.1e-06 0.00018 22.7 3.2 1 23 567 589 567 589 0.98

17 17 4.8e-05 0.0027 19.0 1.0 1 23 595 617 595 617 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4e-05	0.0023	19.2	0.5	2	23	87	108	86	108	0.98
2	17	3.4e-05	0.0019	19.4	1.0	1	23	114	136	114	136	0.98
3	17	3.1e-07	1.8e-05	25.9	1.8	1	23	180	202	180	202	0.98
4	17	0.017	0.97	10.9	4.8	1	21	208	228	208	229	0.91
5	17	2.8e-05	0.0016	19.7	0.3	1	23	263	285	263	285	0.99
6	17	6.4e-05	0.0036	18.6	1.0	1	23	291	313	291	313	0.98
7	17	2.6e-07	1.5e-05	26.1	1.2	1	21	319	339	319	340	0.95
8	17	0.00093	0.053	14.9	0.5	1	23	347	370	347	370	0.97
9	17	2.2e-05	0.0012	20.1	1.9	1	23	370	392	370	392	0.98
10	17	5e-06	0.00028	22.1	1.2	1	23	397	419	397	419	0.97
11	17	1.8e-05	0.001	20.3	1.0	1	23	425	447	425	447	0.98
12	17	2.8e-08	1.6e-06	29.2	1.9	1	23	453	475	453	475	0.99
13	17	1.2e-06	6.7e-05	24.0	1.1	1	23	481	503	481	503	0.98
14	17	9e-05	0.0051	18.1	1.9	1	23	511	533	511	533	0.96
15	17	0.02	1.1	10.7	5.2	1	23	539	561	539	561	0.99
16	17	3.1e-06	0.00018	22.7	3.2	1	23	567	589	567	589	0.98
17	17	4.8e-05	0.0027	19.0	1.0	1	23	595	617	595	617	0.98

Sequence Information

Coding Sequence: atggaaaatataaaaaaagtagttgATGAACATAACCCTGAAGATAATACACATTTATCtataaaacaagaatatttaAACCCTGatgaatttgaccttaaaactgaagaacaagaagaaataTATGAACAAGAAGTTGACACTGAAGAATATAAACTTGGAATTGAAGATATACACAATATTAAAGAAGATGTAGAACAGAATTGTACTCGATTTGATCTAAAGAAAGAGAAACATGAAGAAAAAGATGGACCTGATAAATGTccttattgtaataaaaaaataagggtgAAAAGCAAGTTGGAAGAGCATATACGTGTACACACCAAAGAAAAACCTTTCAAATGTTTATATTGCGCCAAAGCATACACTAAAAGTTCAAGCCTAAAAACTCACATACTCATCCATATACATATATCTAATAAACCTAATACCAGTAACATTACCCCAGAATATACTCGAGACAGATATACTCAACTCGAAAATGAGACTCCAATTTCATATGAACCAGAAGTAGTGCACAAATGTGAAAAACCATATAACTGTTTATACTGTGAAAAGGCCTTTGTAAAGCAGTATGACTTAAAAAGGCACATGCGAACACATACTGGGGACAAGCCCTTTTCCTGTGTTCATTGTGGAAAATGTTTTTCAGATAGATCAGTTTGTAACAGACATATAAttaaagtTGAGACTGATGTTGAAGAACTAGACAAACAGTATAAAGTCAACATAGACgacttaaaaaaagaaattaaacttGAATATGCAGAAAATAACAAACAGTATACATGTGAATtatgttcaaaaatatttaacaccGACGCTGATTTAAAAGCGCATGTCAAAACACATTCAAAAAAGAAACGTTACAGCTGCAGTCTTTGCGAAAAAACTTATTCCGGCTCTAGAGACTTAAAGGACCACGTACGCaagcacacaggagaaaaaccatttCCCTGCACGCACTGCGGAAAGTTTTTTCCTTCCCAGTCGAACTTAAGAAAACACATGATCTACCAAACGAAGAAAAAAGCATACACTTGTTCCTTTTGCAACATGTCTTTCGCTGAAGAAGCCAATTTCAACAACCACGTTCTACGCAAACACACCTGTACTATTTGCGATGAGAAATTTGCCAAAACGCGCTTTTTAAACGCGCACATGCGCACGCACGAGGGCAAAACTTTCGCGTGCGAGCAGTGCGGAAAACGGTTCGAAACCATAACGAAATTGAAACGTCATGTGCGTACGCATAGTTCGGAAAAACCGTTTTCGTGCGTGCACTGTGATAAATCTTTTGCGATGGCAAGGAATTTAGCTATCCATACACGGTCACATACTGGTGAGAAACCGTTTCAATGCACTCACTGTGGAAAATCGTTTTCCGTTAAAGCAAATCTGATGTTACATATGCGTATACATACCGGAGAAAAACCATTCTCTTGCGAATATTGCGAACGAGCATTTACCACTTCTCAGCAGTTGAAAATTCATGTGCGTACTCACACGGGTGTTAAAGTCAAAGCGTATTTGTGTACGGTTTGCGGAGCGTCATTTTCTTTTCATTACGTCTTGAAGATGCACATGCGTACGCACTCGGGGGATAAACCCTACACGTGTGCGCATTGCGAACGAAATTTTGCGAATTTTACGCTGTTAAAGTGTCATATTCGCACGCATACGGGAGAAAGACCGTTTCCTTGTAATTTTTGCGGGAAAACTTTTGCGAAAAAGTACCATTTACGTCTACATGTTCAAACACATACCGGGGAAAAATCATATTCATGCCCACTGTGCGAAAAAACGTTTGTTACCCGGCAGCAAAAGAAAATTCATTTACGCATACATACTAAGGAACAAGGCTAG
Protein Sequence: MENIKKVVDEHNPEDNTHLSIKQEYLNPDEFDLKTEEQEEIYEQEVDTEEYKLGIEDIHNIKEDVEQNCTRFDLKKEKHEEKDGPDKCPYCNKKIRVKSKLEEHIRVHTKEKPFKCLYCAKAYTKSSSLKTHILIHIHISNKPNTSNITPEYTRDRYTQLENETPISYEPEVVHKCEKPYNCLYCEKAFVKQYDLKRHMRTHTGDKPFSCVHCGKCFSDRSVCNRHIIKVETDVEELDKQYKVNIDDLKKEIKLEYAENNKQYTCELCSKIFNTDADLKAHVKTHSKKKRYSCSLCEKTYSGSRDLKDHVRKHTGEKPFPCTHCGKFFPSQSNLRKHMIYQTKKKAYTCSFCNMSFAEEANFNNHVLRKHTCTICDEKFAKTRFLNAHMRTHEGKTFACEQCGKRFETITKLKRHVRTHSSEKPFSCVHCDKSFAMARNLAIHTRSHTGEKPFQCTHCGKSFSVKANLMLHMRIHTGEKPFSCEYCERAFTTSQQLKIHVRTHTGVKVKAYLCTVCGASFSFHYVLKMHMRTHSGDKPYTCAHCERNFANFTLLKCHIRTHTGERPFPCNFCGKTFAKKYHLRLHVQTHTGEKSYSCPLCEKTFVTRQQKKIHLRIHTKEQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -