Bgla028932.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:6059200-6060681[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1.6e-05 0.00092 20.4 5.2 1 23 133 155 133 155 0.97
2 13 1.4e-07 7.7e-06 27.0 2.6 1 23 161 183 161 183 0.98
3 13 4.6e-06 0.00026 22.2 1.3 1 23 189 211 189 211 0.98
4 13 2.3e-08 1.3e-06 29.4 0.3 1 23 217 239 217 239 0.99
5 13 2.1e-05 0.0012 20.1 5.8 1 23 245 267 245 267 0.99
6 13 1.3e-05 0.00073 20.8 0.5 1 23 273 295 273 295 0.99
7 13 1.2e-06 7e-05 24.0 2.2 1 22 301 322 301 322 0.98
8 13 4.6e-07 2.6e-05 25.3 1.6 1 23 329 351 329 351 0.99
9 13 6.7e-09 3.8e-07 31.1 1.3 1 23 357 379 357 379 0.99
10 13 1.4e-08 8.2e-07 30.1 0.5 1 23 385 407 385 407 0.99
11 13 5.3e-06 0.0003 22.0 5.9 1 23 413 435 413 435 0.99
12 13 7.9e-09 4.5e-07 30.9 0.7 1 23 441 463 441 463 0.99
13 13 0.00012 0.007 17.7 2.4 1 23 469 492 469 492 0.98

Sequence Information

Coding Sequence
ATGGACAATGTAAATATAAAGATGGAAGAAAAAATTGAGTTTAACAAGGTTCATTTGGAAATAAAAGTAAAGCAAGAACCTTTGGCTAATGGTGAAGATTTTAAAATggaaatagagaaaaaaaattgtaataataaaatcaaagaTTTATTGACTGGAATTGAGCGTACTGAGAATCATTTGGAAATCACAATAAAGAAGGAACCTacagaagaaaatattaaaacagaTAATGAGAAAAAGATTTGTTCCAATAATGAGTTTTTTATACCAGATGAAGAACACTTTAAAAAGGAAATGGAAGAACAAGAAAATTGTAATcttgaattaaatattaaaaatgaaaaactagTTGTAGGAGAAAATTTAATAGCACAAACACAGAATACAAATTTGTTTTGTTGTCAGTATTGTGAGAAGAGCTTTACTcgcaaatatgttttaaaaaggCATATCCTTTCACATTTGAAAGTAAAACCTCACAAATGTGAGCAATGTGGAAAATCTTTTGCTGAAGCTTCACATCTAAAAATacatattcgcacgcatactGGAGAAAAACCCTATAAATGCACTGACTGTGAAAAATCTTATGCACAGGATTCAAGcctaaaaaaacacatatttatgCACACTGGGGAAAAACCCTATAAATGCGAGGACTGTGGTAAGTCTTTTGCACAAGATGCAaacctaaaaaaacatattctcaCACACACAGGGGATAGGCCCTATAAATGCAAGAACTGTGAAAAATCTTTTTGTGAAGCTTCGAAGTTAAAAAGACATAACCGCACGCACACTGGGGAGAAGCCCTATAAATGCAAATACTGtgaaatatcttttttagacGCTTCGATGTTAACAGTACATATTCGCACACATACTGGGGAAACCCCCTATAAATGCACCCACTGTGATGTAGCCTTTGCATATTTATCACACTTAAAACGACATATGCGTACGTACACTGGAGAGAAGCCCTATAAATGTACTCATTGTGAGATAGTTTTTTCAGAATTGTCAGCTTTAAAAAGACATATTCGCACGCACACCGGGGAGAAGCCCTATAAATGCAAGACCTGTGAAAAATCATTTTCGGATGCTTCAAATTTAAGAATACATATTCGCACGCACACTGGGAAAAAGCCATATAAATGCAAGGACTGTGGTAAATCTTTCCCACAAGTTGCAaacctaaaaaaacatattctcaCACACACTGGGGAAAAGCCCTATAAATGCAAGAACTGTGAAAAATCTTTTTGTGAAGCCTCGAAGTTAAAAAGACATACTCGCACGCATACCGGGGAGAAGCCCTATGAATGCAAGACCTGTGAAAAATCATTTTCGGATGCTTCAAATTTAAGAGTACATATTCGCACACACACTGGGGAGAAGCCCTATAAATGCGAACATTGCCAGCAATTATTTACTGCCCAAGCAAGTTTAAACACACATTTGCGAACCCAACATCAATAA
Protein Sequence
MDNVNIKMEEKIEFNKVHLEIKVKQEPLANGEDFKMEIEKKNCNNKIKDLLTGIERTENHLEITIKKEPTEENIKTDNEKKICSNNEFFIPDEEHFKKEMEEQENCNLELNIKNEKLVVGENLIAQTQNTNLFCCQYCEKSFTRKYVLKRHILSHLKVKPHKCEQCGKSFAEASHLKIHIRTHTGEKPYKCTDCEKSYAQDSSLKKHIFMHTGEKPYKCEDCGKSFAQDANLKKHILTHTGDRPYKCKNCEKSFCEASKLKRHNRTHTGEKPYKCKYCEISFLDASMLTVHIRTHTGETPYKCTHCDVAFAYLSHLKRHMRTYTGEKPYKCTHCEIVFSELSALKRHIRTHTGEKPYKCKTCEKSFSDASNLRIHIRTHTGKKPYKCKDCGKSFPQVANLKKHILTHTGEKPYKCKNCEKSFCEASKLKRHTRTHTGEKPYECKTCEKSFSDASNLRVHIRTHTGEKPYKCEHCQQLFTAQASLNTHLRTQHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-