Bgla019068.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294048.1:36064051-36066513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0026 0.15 13.5 1.6 1 23 133 155 133 155 0.98 2 22 3.8e-05 0.0021 19.3 1.7 1 23 161 183 161 183 0.94 3 22 3.6e-06 0.0002 22.5 1.4 1 23 188 210 188 210 0.97 4 22 0.0011 0.065 14.6 2.4 3 23 217 237 215 237 0.93 5 22 0.00012 0.0066 17.8 0.8 1 23 243 265 243 265 0.96 6 22 0.00012 0.0066 17.8 3.0 1 23 271 293 271 293 0.98 7 22 0.00013 0.0075 17.6 4.0 1 23 299 321 299 321 0.97 8 22 4.3e-05 0.0025 19.1 2.7 1 23 327 349 327 349 0.97 9 22 3.9e-07 2.2e-05 25.5 3.4 1 23 355 377 355 377 0.99 10 22 2.1e-05 0.0012 20.1 1.3 1 23 383 405 383 405 0.98 11 22 0.0017 0.094 14.1 0.3 1 23 411 433 411 433 0.95 12 22 0.013 0.76 11.3 0.4 2 22 439 459 438 459 0.92 13 22 1e-06 5.7e-05 24.3 1.5 3 23 493 513 491 513 0.96 14 22 0.019 1.1 10.8 2.2 1 23 522 544 522 544 0.98 15 22 1.4e-05 0.00079 20.7 3.0 1 23 550 572 550 572 0.99 16 22 0.039 2.2 9.8 1.7 2 23 578 600 577 600 0.95 17 22 5.5 3.1e+02 3.0 1.2 3 23 610 629 609 630 0.92 18 22 0.00077 0.044 15.2 0.5 1 23 635 657 635 657 0.98 19 22 2.3e-05 0.0013 20.0 0.3 1 23 663 685 663 685 0.98 20 22 1.7e-06 9.4e-05 23.6 1.7 1 23 691 713 691 713 0.97 21 22 0.002 0.11 13.9 2.4 1 23 719 741 719 741 0.97 22 22 3.5e-05 0.002 19.4 3.2 2 23 748 769 747 769 0.96
Sequence Information
- Coding Sequence
- atgGAGGAAAATAAAGCAAGTATAAAAGAGGAACCAGGGTACTATGAACTAAAATGCGAGATTCAAGAAAACGAAAATCAAATTATTGATAAATTAACAATACAAGATATTGTGAACATTAAACTGGAAATAGATgaacaaaaaattgataatgaAAATGATTATAAAACTATGACCCAGGATTACAAACAAGAATTTGAGGAAGACTTTAAACCGGtaaaatttgaagttgaaaACCATGATGTAGaatttaaaatggaaaatttaGAGAAAGATGCTTTCATGGAACAATTTATTCTAAACAATTTCAGTGAAGAATCCGAAGATGTTGATGTTGAAACATATACTAATGAACCAAACCCATTAACCAATATTGAAAATAACGCAGAAGAAATACACCAATGTCCCATTTGTGAATTGAGTTTCAGATGGAAACACGTTTTAATAAATCACATAAACACGCATAACAATTTAAAACCTTATGTGTGTAACGATTGCGGGAgacaattttctcaaaaaagatACTTGACCAGCCACAATTTTGTACACAAAAATAAACCTTATACATGCAATGAATGTGGAAAAATGTTTTCTCAGAAAATACATTTGATCCAACACAATTTGGTGCACGAAAATTCACTTTTGGCTTGCACATtatgcgaaaaaaaatttaagcatAAAAGCAGTTTGGCACAACATAGTTTCGTACACGTACAAGGTGGACAATTTGCTTGTGAATTATGCGATAAAAAATACACGTCTAAACAGAATTTAATTGATCATAATCGACTTCATACAGGCGAAAAACCGTATGCATGTTCATTATGCCAGGCATGCTTTGCAAAAAAGGATAGTTACAATAAACATATGCGCAGCCATTCCGAAGGAAAAACACATGAATGCCATTGGTGCAATTTTAGTACTAGTAACAAATCCAATTTGAGAGAACACCTTAATATCCACCAAGGAATTAAACCATATGCTTGTAATCTTTGCAATAGGTCATTTGCGAAAAAAGACACATTAAAAAAGCACCATCTAATTCATACTAAAGAAAAGCCATATACTTGTGAATATTGCGGTAAAAAATTTCGGCAAAAATTCTCTCTGACGGAGCATCTACGCAGACACAAAGGTGATAAGCCTTTTACTTGTTTGTATTGCCCAAAAGCCTTCACGGAGAAGTATCAGTGGATTAGGCACACTCGATCACACACGGGTGAGAAGCCCTTCGAATGTGCGCATTGTGAAAAAAGATTTTCTGCAAAGACGGCTTTAGTTATACATATAGGCTTGCACATGCAAAGTTCCGTGGAATGCGCACACTGCAATATGAAGTTTCGTAGAAAGGCGCAGCTTGTACCGCATTTACGCCGTTGTTGTAAACAAAAATTTGGCCCTGGAAATGATCTTACAGAGCAAAAAGAAAACAGTGCTAGtcaattgaaaaatgaaaacagCAAAGAAGAGTTAGCATGTAAAATTTGTGATAAAAAGTTCACGAGAAAGCGGGACTTGACCGTGCACATGAGCAAGCATAATAAGGCTTGTACACAAAAAGTGTATGTCTGTGATGTTTGCGATGAAAATTTCGAGTTTAGGTATTTGCATAAACAGCATATGCGCCTACACGTTGGTGAAAAACCATACAAGTGTTCCATTTGTGATCAATCATAcagtaggaaaaaaaaattactacagcATCAAACAACAcatggtgaaaaaaaaatcaagtgtgCAGGATGtgatcaaatgttttttttacgtcAGCATATGAGATTGCATATCAGGTTAAAGCATTTTTACAAATCTGATAATATCATGTTATGTAAGGTTTGTCGTGAGGAAACCTCGGCCAATGAAATGGAACAGCACATGCTCAAGCACCACTCTAAGATTTATTATGCATGTCCACACTGTGATAATAACtttgaattaaaaacaaatttggaTATTCACATCCTCACACACAATACAGAAAAGGTATTTAATTGCGATCAGTGTGACAAAATATTCATTTCAGAACCAAATTGGAATAGTCATATGAGAATGcaccaaataaaaaaactgcattCGTGCAAACTTTGTGGTGAAAAGTTCATTTCCAGCTCTAATTTAAACTTGCACATGCTTACCCATCTAGCGGAAAAACTGTATTCCTGTTCAAAGTGCAATCTAAAATTCTCTGAGAAGAAACAATTAATTGAACATAAAACTTCTCACAGTAAGGCAAAACCTTGCATGTGTTGGCTGTGCAAGAAAAAATTTATGTCTAGTTCCGAATTAAACATTCATATGCGCACGCATTCAGCAAAGACTACTAAGCCACTCCCAAGAACAGAAACCAAAACTCAAAATTCAACGTCAACAATATCTAGCATTTCGCCAAATGTAGAATTAGAAATCGTAGAAATAGATATGGATGAAATTCTTATAGAGGATATGCCAACAAATTGTAGCTGA
- Protein Sequence
- MEENKASIKEEPGYYELKCEIQENENQIIDKLTIQDIVNIKLEIDEQKIDNENDYKTMTQDYKQEFEEDFKPVKFEVENHDVEFKMENLEKDAFMEQFILNNFSEESEDVDVETYTNEPNPLTNIENNAEEIHQCPICELSFRWKHVLINHINTHNNLKPYVCNDCGRQFSQKRYLTSHNFVHKNKPYTCNECGKMFSQKIHLIQHNLVHENSLLACTLCEKKFKHKSSLAQHSFVHVQGGQFACELCDKKYTSKQNLIDHNRLHTGEKPYACSLCQACFAKKDSYNKHMRSHSEGKTHECHWCNFSTSNKSNLREHLNIHQGIKPYACNLCNRSFAKKDTLKKHHLIHTKEKPYTCEYCGKKFRQKFSLTEHLRRHKGDKPFTCLYCPKAFTEKYQWIRHTRSHTGEKPFECAHCEKRFSAKTALVIHIGLHMQSSVECAHCNMKFRRKAQLVPHLRRCCKQKFGPGNDLTEQKENSASQLKNENSKEELACKICDKKFTRKRDLTVHMSKHNKACTQKVYVCDVCDENFEFRYLHKQHMRLHVGEKPYKCSICDQSYSRKKKLLQHQTTHGEKKIKCAGCDQMFFLRQHMRLHIRLKHFYKSDNIMLCKVCREETSANEMEQHMLKHHSKIYYACPHCDNNFELKTNLDIHILTHNTEKVFNCDQCDKIFISEPNWNSHMRMHQIKKLHSCKLCGEKFISSSNLNLHMLTHLAEKLYSCSKCNLKFSEKKQLIEHKTSHSKAKPCMCWLCKKKFMSSSELNIHMRTHSAKTTKPLPRTETKTQNSTSTISSISPNVELEIVEIDMDEILIEDMPTNCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -