Bgla016299.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294047.1:28844968-28846959[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.5e-06 0.00037 21.7 3.7 2 23 62 83 61 83 0.97 2 19 9.8e-05 0.0055 18.0 4.3 1 21 89 109 89 111 0.95 3 19 3.9e-07 2.2e-05 25.5 1.0 1 23 117 139 117 139 0.98 4 19 0.0002 0.011 17.0 4.8 1 23 145 167 145 167 0.98 5 19 1.7e-05 0.00099 20.4 1.6 1 23 173 195 173 195 0.97 6 19 0.026 1.4 10.4 3.3 2 22 201 221 200 221 0.92 7 19 0.25 14 7.3 0.0 8 23 303 318 297 318 0.92 8 19 0.00014 0.0078 17.5 0.1 5 23 332 350 329 350 0.94 9 19 0.013 0.72 11.3 6.1 2 23 356 377 355 378 0.94 10 19 0.00037 0.021 16.2 6.2 1 23 384 406 384 406 0.97 11 19 3.9e-06 0.00022 22.4 5.2 1 23 412 434 412 434 0.99 12 19 0.0006 0.034 15.5 5.0 1 21 440 460 440 462 0.94 13 19 4.5e-07 2.6e-05 25.3 2.6 1 23 468 490 468 490 0.98 14 19 6.1e-07 3.5e-05 24.9 1.8 1 23 496 518 496 518 0.99 15 19 0.00016 0.0089 17.3 3.0 1 21 524 544 524 546 0.95 16 19 6e-07 3.4e-05 24.9 0.2 1 23 552 574 552 574 0.98 17 19 5.9e-06 0.00033 21.8 0.4 1 23 580 602 580 602 0.98 18 19 5.2e-05 0.0029 18.9 2.2 1 23 608 630 608 630 0.96 19 19 1.8e-07 1e-05 26.6 0.3 1 23 636 658 636 658 0.98
Sequence Information
- Coding Sequence
- ATGGACGCGATTGAGGCCGAAAGTAAATATGGAGAAATCGTCCCAGATCTGGGAAACAGTGAAATTTCTTCTGGAGCAAAAGATTATATGGACTTCAAGGATGAAGATTACTCTGACGATGATGATGATTTTCCAGTAATTGatcattttttattacaaatagaATCACAAAAACCAGTGTTAAAGTGTGAAAATTGCAAAACGACATTTAATGATAAAAGACATTTAGTTCGTCATATGCGGATTCATACGGGAGAAAGACCTTACGAGTGTGACCAATGtggtaaaaaatttacacaaactGCACATTTAACTGACCATCTACGTTGTCATAGTGGGTCTAAACCATTTATCTGTTCAGTTTGTGAAAAAGGGTTCACAAAAAGCAGTAATTTGACCAGGCATCTTATGACACACACTaatttaaaagagtttaaatgTACACAATGTGAAAAGACATTCAGTGATAAAAAACGATTAGATCACCATCTTAAAATACATACTGGAAGGAAACCATTTGCATGTGATCAATGTGATAGGACATTTATGGGAAAAGGTCATTTATCTCGTCATATCCGCAGCCatgaaataaaaccattaatttGTACAAATTGTAAGCAACACTTTAAAAAGAATACAGATTTAGCCAAACATGTTTGTACAAAAAAtgttgttgaaaaaaaatctggtacTGAAAGTGAAGAGAAAGATTCGGAAAGTGAGCCTGAAGAAATTAAAGATTTACCTGAatatataaacataaataatgAGGAAGAGTTAAGTGATCATTCTGATACAGAAGAAAATAGTTTCTCAGCACCAGCATCACCTAGTgataaaaaaacacttatttCACTAAAAAGTGAGGAAAGTATGAAAATTATACCTAATTGTACCATTGgtgaaaaatcatttaattataTTAGTGACTTGACAGAACATATAAATTCTCACAGTACTGTGAAAATTGAGACAAAACCTGCTATTTGTATTATTTgtgaaaaatcatttaattatgCGAGTGAGTTAACAGAACATATTCGTAGTCACAAAGATGATCAACTTAGTTGCAAAGATTGTAATAAAGAATGTCACTCCAAAAATGATTTGAGTGAACATATACTTACTCACCATCCTAACAAAAAAACCCATATTtgtttcttttgtaaaaaaacctACAAGCTTAAAAATGACTTAAGAAAACACATGCGGACTCACAGCGATGTGAAGCCATTTCAGTGTACATACTGTGAAAAAGCATTTCATGATAACAGGCATTTAACAAGGCATATAAGAATACATACTGGTGAACGTCCATATGCTTGTAAACTATGCGATAAAAGATTTACTCAAAGCGCACATTTGAGTGAACACAGAAGATGTCACACTGAAGAAAAACCATTTGTTTGCCCACTGTGCGGTAAAACTTTTACGAAAAACAGTAACATGACTAGACACGTACATACGCACGCTGATTTAAGAGAATTTCAATGTACGTACTGTAATAAAGCTTTCAATGATAAGAGATACTTGGACAGACATATACGAGTCCATACTGGTGAGCGACCTTATCCCTGTGACCAATGTGAGAAAAGGTTCAGTCAAAGCGCCCACTTGATAGAACACCTACGCTGTCACGCAGGATTGAAACCTTTTGTTTGTGAGTTTTGTGGAAAAGGATTCACTGGAAGTAGCGGATTGGCAAAGCATATACGTACACATAGTGAAGTGAAAGAGTTCCCGTGTACATATTGTGAAAAAGGATTTTCAGAAAGAACAGATCTGGTGAGACATTTAAGGATACATACTGGAGAAAGACCTTATGCCTGTGATCAATGCGACAAAAAGTTTACTCAAAGCGTCCACTTAAAGGAACACTCAAATTTACACACTGGTGTTAAACCTTTTGTTTGTACAATCTGTGATAAAGCGTTTGCTCAGGCGAACTCGTTACGTAAACACGTTCGGACACATAGGCTGAGCGACTACTAG
- Protein Sequence
- MDAIEAESKYGEIVPDLGNSEISSGAKDYMDFKDEDYSDDDDDFPVIDHFLLQIESQKPVLKCENCKTTFNDKRHLVRHMRIHTGERPYECDQCGKKFTQTAHLTDHLRCHSGSKPFICSVCEKGFTKSSNLTRHLMTHTNLKEFKCTQCEKTFSDKKRLDHHLKIHTGRKPFACDQCDRTFMGKGHLSRHIRSHEIKPLICTNCKQHFKKNTDLAKHVCTKNVVEKKSGTESEEKDSESEPEEIKDLPEYININNEEELSDHSDTEENSFSAPASPSDKKTLISLKSEESMKIIPNCTIGEKSFNYISDLTEHINSHSTVKIETKPAICIICEKSFNYASELTEHIRSHKDDQLSCKDCNKECHSKNDLSEHILTHHPNKKTHICFFCKKTYKLKNDLRKHMRTHSDVKPFQCTYCEKAFHDNRHLTRHIRIHTGERPYACKLCDKRFTQSAHLSEHRRCHTEEKPFVCPLCGKTFTKNSNMTRHVHTHADLREFQCTYCNKAFNDKRYLDRHIRVHTGERPYPCDQCEKRFSQSAHLIEHLRCHAGLKPFVCEFCGKGFTGSSGLAKHIRTHSEVKEFPCTYCEKGFSERTDLVRHLRIHTGERPYACDQCDKKFTQSVHLKEHSNLHTGVKPFVCTICDKAFAQANSLRKHVRTHRLSDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -