Bgla028524.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:284997-286628[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00087 0.049 15.0 3.2 2 23 81 102 80 102 0.97
2 16 6.6e-07 3.7e-05 24.8 2.3 1 23 108 130 108 130 0.99
3 16 7e-07 4e-05 24.7 1.9 1 23 136 158 136 158 0.98
4 16 2e-05 0.0011 20.2 3.6 1 23 164 186 164 186 0.98
5 16 1.8e-06 0.0001 23.5 1.5 1 23 192 214 192 214 0.95
6 16 3.7e-07 2.1e-05 25.6 3.3 1 23 220 242 220 242 0.98
7 16 5.6e-08 3.2e-06 28.2 0.7 1 23 248 270 248 270 0.99
8 16 5.7e-06 0.00033 21.9 2.3 1 23 276 298 276 298 0.99
9 16 5.6e-06 0.00032 21.9 3.7 1 23 304 326 304 326 0.98
10 16 1.8e-06 0.0001 23.5 2.9 1 23 332 354 332 354 0.98
11 16 3e-06 0.00017 22.7 4.1 1 23 360 382 360 382 0.98
12 16 5.6e-08 3.2e-06 28.2 0.7 1 23 388 410 388 410 0.99
13 16 1.3e-05 0.00073 20.8 2.5 1 23 416 438 416 438 0.99
14 16 3.5e-06 0.0002 22.6 5.0 1 23 444 466 444 466 0.97
15 16 3.5e-06 0.0002 22.6 4.2 1 23 472 494 472 494 0.98
16 16 9.2e-06 0.00052 21.2 1.6 1 23 500 522 500 522 0.99

Sequence Information

Coding Sequence
ATGGAGGACGTAAAAATTAAACTAGAGGTCTATGAAATAAAGAAAGAGCTTGTTGAAGAAGAATTGGAAGTTCCCATTAAAGAAGAACTTTTAGTTTCTGTTGAACAAATCAAGTCTGAAGTTGCAGAGAATGAATTTTTTGTTGACATTAAGAATGAAATTCTGGATAAAAAGGATTTCGATGAAGTCAATGACAAATTTCCGAGTGATTTGCAGACACACAACTGTGAGACAACTTTAAAGTGTTCACATTgccaacagttttttttagagAACTCGAATTTAGTCAGACATATGCAAACTCACACACTAGAAAAACCCTATTCTTGCTCGTATtgtgaaaaatcttttaaacgAAAACCATATTTAGTGCAACATTTACGGACCCATACAGGAGAAAAACCTTATTCCTGTTTACAGTGCGGAAAATCTtttacacaaaaatccaatttaATACAACATTCACAAAAACACAGTGAAGAAAAACCTTACTCCTGCTTACAGTGCGAAAAATCTTTTACACATAAAGCATATTTAGTGCAACATACACGGACACACACGGGAGAAAAACCTTATTCCTGCTCACAGTGCGGAAAATCTTTTGCAGATAAATCAAAGTTAACGAGGCATTCATATgtgcacacaggagaaaaaagttattgttGTTCTGAGTGCGGAAAATTATTTACacaacaatttaatttaatcagaCATATCCGCACGCACACGGGAGAAAACCCCTATTCATGCCCACAGTGCGGAAAATCGTTTGCAGATAAATCGACTTTAGTAAAACACTCAAGGACACACACAGGAGGAAAACCTTATTCCTGCTCACAGTGCGGAATTTGTTTTAAACAGAAATTAAGTTTAATTCTGCATATTCGCACGCACAAGGGAGATAAACCTTACTCCTGTTTACAGTGCGGAAAATCTTTTACACATAAAGCATATTTAGTGCAACATACACGCAAACACACGGGAGAAAAACCTTATTCTTGCTCACAGTGCGGAAAATCTTTTACAGAAAAATCAAAGTTAACGAGACATTCAAAGATGCACACAGGAGAAAAGAGTTATTGTTGTACTGAGTGCGGTAAATTATTTTCACTACAATTTAATCTAAAGAGACATATCCGCACGCACACGGGAGAAAAACCCTATTCATGCCCACAGTGCGGAAAATCGTTTGCAGATAAATCGACTTTAGTAAAACATTCAAGGACACACACAGGAGGAAAACCTTATTCCTGCTCACAGTGCGGAATTTGTTTTAAACAGAAATTAAGTTTAATTCTGCATATCCGCAGGCACAAGGGAGAAAAACCTCATTCCTGCTCACATTGCGGAAAATCTTTTGTAGAAAAATCAAAGTTAACGAGACATTTAAAGATACATAcagaagaaaaaagttattgttGTACTGAGTGCGGTAAATTATTTACactacaatttaatttaaagagaCATATCCGCACGCACACGGGAGAAAAACCCTATTCCTGCACGCAGTGCGAAAAATCTTTTGCAGAAAAATCGACTTTGGTAAAACATTCAAGGACTCACACACAGAAGGAAAACCTTATTGCTGCTCACAGTGAGGATAATGTTTTACACAAAAATCAAGAGTGA
Protein Sequence
MEDVKIKLEVYEIKKELVEEELEVPIKEELLVSVEQIKSEVAENEFFVDIKNEILDKKDFDEVNDKFPSDLQTHNCETTLKCSHCQQFFLENSNLVRHMQTHTLEKPYSCSYCEKSFKRKPYLVQHLRTHTGEKPYSCLQCGKSFTQKSNLIQHSQKHSEEKPYSCLQCEKSFTHKAYLVQHTRTHTGEKPYSCSQCGKSFADKSKLTRHSYVHTGEKSYCCSECGKLFTQQFNLIRHIRTHTGENPYSCPQCGKSFADKSTLVKHSRTHTGGKPYSCSQCGICFKQKLSLILHIRTHKGDKPYSCLQCGKSFTHKAYLVQHTRKHTGEKPYSCSQCGKSFTEKSKLTRHSKMHTGEKSYCCTECGKLFSLQFNLKRHIRTHTGEKPYSCPQCGKSFADKSTLVKHSRTHTGGKPYSCSQCGICFKQKLSLILHIRRHKGEKPHSCSHCGKSFVEKSKLTRHLKIHTEEKSYCCTECGKLFTLQFNLKRHIRTHTGEKPYSCTQCEKSFAEKSTLVKHSRTHTQKENLIAAHSEDNVLHKNQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-