Bgla007638.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294045.1:1813447-1827235[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.0078 0.44 12.0 2.3 1 23 8 30 8 30 0.98 2 39 0.016 0.91 11.0 1.9 1 23 36 59 36 59 0.95 3 39 0.0051 0.29 12.6 1.0 1 23 66 88 66 88 0.98 4 39 0.11 6 8.4 0.2 2 23 95 117 94 117 0.93 5 39 0.0027 0.16 13.4 2.5 1 23 122 144 122 144 0.98 6 39 0.0047 0.26 12.7 2.5 1 23 154 177 154 177 0.96 7 39 9.7e-07 5.5e-05 24.3 0.2 1 23 182 204 182 204 0.98 8 39 0.00071 0.04 15.3 3.6 1 21 210 230 210 232 0.93 9 39 0.00023 0.013 16.8 1.8 1 23 238 260 238 260 0.98 10 39 0.0027 0.15 13.5 1.4 1 23 266 289 266 289 0.97 11 39 0.011 0.65 11.5 4.2 1 23 319 341 319 341 0.93 12 39 0.0033 0.19 13.2 2.8 1 23 347 370 347 370 0.96 13 39 0.0012 0.069 14.6 1.5 1 23 377 399 377 399 0.98 14 39 0.33 19 6.9 1.0 3 23 407 428 405 428 0.92 15 39 0.002 0.11 13.9 1.9 1 23 433 455 433 455 0.97 16 39 9 5.1e+02 2.4 0.4 1 23 465 488 465 488 0.76 17 39 7.6e-05 0.0043 18.3 0.5 1 23 493 515 493 515 0.97 18 39 7.7e-06 0.00044 21.5 1.3 1 23 521 543 521 543 0.98 19 39 0.0038 0.21 13.0 4.9 1 23 549 571 549 571 0.97 20 39 5e-05 0.0028 18.9 0.3 1 23 577 600 577 600 0.97 21 39 0.22 13 7.4 1.7 1 23 630 652 630 652 0.92 22 39 0.003 0.17 13.3 2.4 1 23 658 681 658 681 0.97 23 39 0.84 48 5.6 2.6 1 23 688 710 688 710 0.98 24 39 0.23 13 7.4 0.4 2 23 717 739 716 739 0.92 25 39 0.00063 0.036 15.5 3.6 1 23 744 766 744 766 0.98 26 39 0.44 25 6.5 0.7 1 23 776 799 776 799 0.93 27 39 1.2e-05 0.00069 20.8 0.9 1 23 804 826 804 826 0.98 28 39 9.9e-05 0.0056 18.0 1.4 3 23 834 854 832 854 0.96 29 39 0.0039 0.22 13.0 3.3 1 23 860 882 860 882 0.98 30 39 0.017 0.96 11.0 2.0 1 23 919 941 919 941 0.89 31 39 0.0038 0.22 13.0 2.2 1 23 945 968 945 969 0.95 32 39 0.0085 0.48 11.9 1.6 1 23 976 998 976 998 0.99 33 39 0.048 2.7 9.5 0.8 2 23 1005 1027 1004 1027 0.93 34 39 0.00035 0.02 16.2 1.9 1 23 1032 1054 1032 1054 0.99 35 39 0.039 2.2 9.8 0.2 2 23 1065 1087 1064 1087 0.96 36 39 0.00061 0.035 15.5 1.0 2 23 1093 1114 1092 1114 0.96 37 39 0.00012 0.0069 17.7 2.0 1 23 1120 1142 1120 1142 0.98 38 39 2e-05 0.0011 20.2 1.6 1 23 1148 1170 1148 1170 0.98 39 39 0.00022 0.013 16.9 0.8 1 23 1176 1199 1176 1199 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATGGAAAGAAGAAGTACACGTGTAAAACTTGCAACAAAGTGCTTCGCTCAAACAAATCCATAAGACAACATTTCAACGTTCACACAGAAGCCAAGAAGTTCGAGTGCGACTTATGTCACAAAAAATACAAGAGAGCTTTTGAGGTCACCCTTCACAAAGCCAGAGCACACGTTCCTAAAATAGTAAAGTTCGAATGTGATTTGTGTTCGAAACTTTTAACAACAAAACAGAGCTTGATAGTACATAAAAGAAGGCACACCAAAACTTACACCGTTCAGTGTGAATTTTGCGACGCTGGTTTTTACACGAAAGGGGATTACAGTCTTCATTTGGGTTCAAAACATGGCCAGAGTAATTTTATCTGTGAAGTTTGCAGCAGAGCCTGCTACGATAAAAATACTCTTACCCAGCATCGAATGACACACGAAGAAGGGTATAGggagaataaaaaatttaaatgtgatGAATGCGACAAAAGAATGTCGACTAAGAAGCTACTCAAAGATCACAAAACGAGAATGCACAGTGGCAGAAAATATGTTTGCGAACTCTGTGGAAAAGCCTTTACTTCCAGCGTCAAACTCAAGGAGCACATGAATGTCCATTTGGGCATCAAACCTCACATCTGCAAATATTGTCAAAAAGGTTTCACGAACTCTAGCAATATGATAGCACATGTTAGATGCCATACAGGAGAAAAACCCTACTCTTGTAATTTGTGTGGGAAAAGTTTTGCTCAGAGCAGTGCCCACAAGATACATTTGAGGCAGCATTCTGGCGAAACGCCTTATCATTGTGGAATGTGCAATGACTCGTTCATTTCCAAGAGTTTGCTCAATGCTCATGTTAAAAGTAAACATAGCAGTGTTGCATTTAATAAgttgcgTGTGATGTCAAACGGAGTTGCCTTGGAATACAACGTTGAAGTAATAGacggcaaaaaaatatacaattgcaAAATTTGCAATAAAACTTTACGATCTAGGACCTCTCTTAGACAACATTGCAACGTCCATACAGACattaaaagatataaatgtgacatttgcaataaaaaatttaaaagaggcTTCGAAGTGAAACTCCACAAGCAAAGAACCCACGCGATAAGTAAACCAACATTTGAATGCGACATCTGCAGTAAATTTCTATCAAGTAAAAACACCTTGCTGATACACAAACGGCGACACAATAAAGACTACGCTATAAACTGTGAATTTTGTGAGGTTAAGTTCTTTAAAAAGTCAGATTATCGCCTCCATCTTGGTTCCAAACACGGAAGGAGTGAATTCATCTGTGACGTATGCAGTCGTTCTTGCTACGATAAATACAGCTTGGTCCAGCATCGTATGATCCATGAAGAGGGCTACAAAGACAGCAAAAAGTTCAAATGTGACATTTGCAATATAGGAATGCCAACTGAACGACTAGTACGAATGCACAAATACAGAAGGCATACCgataaaaaatatgtctgtgAAATTTGTGGTAAATCCCTGTGTTCAAGTGGTAGCTTAAAGGATCACAAGATTGTCCACCAAGGACTCAAGCCACATGTTTGCACCTACTGTGGAAAAGGGTTTGCAAATAAAACAACTCTGGTCTTGCATTTGAGATCGCATACGGGAGAAAAACCGTATTGCTGTGACTTGTGTGGAAAGAGATTTTCGCAGAGCAGTGCCCATAAGATCCATTTGAGACAGCATTCTGGTGAAAAACCGTACAATTGTGGGATATGCACTGAATCTTTTATTTCTAAGAGTTTGTTAAATGCACATGTCAAAAGTAAACACAACAGTGTTATCTATAATAAcTCGACTCTTGTCTCGAATGGAATAAAATTGGAATATGAAATTGAAACTGTCGACGGCAAGCAAAcgtttatttgtcaaatttgcAACAAAGCATTACAATCCTTAAGATCATTACGGCAACATTGCAACGTTCACTCAGAAATCAAAAAGTTCGAGTGTGACATGTGTGACAGAAAATTTAAACGATCTTTTGAAGTTTCACTTCACAAAAAACGATCTCACACtcagaaaaaaactaaattcgaATGTGAAATATGCTGTAAATTGCTGACAAGTAAAAACAGTTTGattattcacaaaaaacggcATACCAAGACATACGCACTTAAATGTGAGTTTTGTGATGCcggtttttatacaaaattggaTTACAATCTTCATCTTGGATCCAAACACGGAAAAAGCAGCTTCATTTGCGAGATATGCAGTCGTTCTTGTTATGACAAATATACTTTGACACAGCATCGCATGACCCATGAAAAAGGTTACAAAgacaacaaaaattttaagtgcGATATTTGCCAAAAAGGTATGTCTTCCGCAAAACTTGTACGAGAACATAAATACAGGATGCACAATGGTAAAAAATTCGTTTGCGAGCTTTGCGGAAAGTCGCTTTGTTCGAGAAGCAGTTTGAAAGATCACATGATTGTTCATCAAGGTTTGAAGCCCCATCTGTGCAAATATTGCGGAAGGGGGTTCGCCAATACTAGCACCCTTGTTTTGCATCTGCGATCTCACACGGGAGAAAAACCGTACTCTTGTAACTTGTGCGAAAAGAAATTCTCGCAAAGCAGTGCTCATAAGATACATTTAAGGCAGCATTCTGGGGAAAAACCATATGTTTGTGGTATATGCTGTGAATCattaacACTAAGAATTAATCACAAAAAGTACCAGTACGAAGTTTCCATAGTAGATGGCGAAAAGATCTATCATTGCATAATCTGCAATCTCAAGTTCGAAAGGAAAAGTCTACTAAAACGACATTTACCAACCCATAAGACAAATTATACATGCGACATATGCAACAAACAATACAAATACTTACGTGCTTTGGAGCAACATAAGGATAAAGGTCACCATGGGATGTctgatcaaaaatataaatgcgAGTCGTGCGATAAGACACTGTTTAGTCTCAGTGGTTACAATCTGCATTTAAAGAAACACGAGGGAGCATATACTGTCAGATGCGCTTTTTGCGACCGGGGGTTTTTCAGCAACTCCACATATCGCCTCCATCTTGGTTCCAAGCATGGCAAGAGCGATTACGTTTGTGATATATGTGGACGTCATTTGTTCAGCCAAACAAGCCTGAATAATCACAGAATGACGCACGAAGAGGGCTACAAAGATAAGCCTAAATCACAATGTGCCATTTGCGAGAAATGGTTTGCATCTGAGAAAACCTTACGTGTGCATATATACACAAGACACGAGTGCAGTAGATGTATCTGTGATATTTGTGGGAAAGAACTGAACAACAAAAAGGCATTGCAGACGCATACGAATATCCATTTAGGGCTAAAGCCATATATTTGCTCGTATTGTGGAAGAGGCTTCGCCGACAAAACCACCCTGACTTGTCATATCCGTACTCATACAGGAGAAAGACCTTATTGCTGTGACGTGTGTGGCAAAAGGTTTGCTCAACCGGGAGCCTTTAAGATTCACAAAAGGAAGCATTCTGGAGACAAACCATTTCAGTGTGAATTATGTAAGGAAGCTTTTATTTCTAGTAGTGCTCTTAACACACATTTCAAAAGTAAACATAAGGTTATGGACTATTTTAATTCCTAA
- Protein Sequence
- MEDGKKKYTCKTCNKVLRSNKSIRQHFNVHTEAKKFECDLCHKKYKRAFEVTLHKARAHVPKIVKFECDLCSKLLTTKQSLIVHKRRHTKTYTVQCEFCDAGFYTKGDYSLHLGSKHGQSNFICEVCSRACYDKNTLTQHRMTHEEGYRENKKFKCDECDKRMSTKKLLKDHKTRMHSGRKYVCELCGKAFTSSVKLKEHMNVHLGIKPHICKYCQKGFTNSSNMIAHVRCHTGEKPYSCNLCGKSFAQSSAHKIHLRQHSGETPYHCGMCNDSFISKSLLNAHVKSKHSSVAFNKLRVMSNGVALEYNVEVIDGKKIYNCKICNKTLRSRTSLRQHCNVHTDIKRYKCDICNKKFKRGFEVKLHKQRTHAISKPTFECDICSKFLSSKNTLLIHKRRHNKDYAINCEFCEVKFFKKSDYRLHLGSKHGRSEFICDVCSRSCYDKYSLVQHRMIHEEGYKDSKKFKCDICNIGMPTERLVRMHKYRRHTDKKYVCEICGKSLCSSGSLKDHKIVHQGLKPHVCTYCGKGFANKTTLVLHLRSHTGEKPYCCDLCGKRFSQSSAHKIHLRQHSGEKPYNCGICTESFISKSLLNAHVKSKHNSVIYNNSTLVSNGIKLEYEIETVDGKQTFICQICNKALQSLRSLRQHCNVHSEIKKFECDMCDRKFKRSFEVSLHKKRSHTQKKTKFECEICCKLLTSKNSLIIHKKRHTKTYALKCEFCDAGFYTKLDYNLHLGSKHGKSSFICEICSRSCYDKYTLTQHRMTHEKGYKDNKNFKCDICQKGMSSAKLVREHKYRMHNGKKFVCELCGKSLCSRSSLKDHMIVHQGLKPHLCKYCGRGFANTSTLVLHLRSHTGEKPYSCNLCEKKFSQSSAHKIHLRQHSGEKPYVCGICCESLTLRINHKKYQYEVSIVDGEKIYHCIICNLKFERKSLLKRHLPTHKTNYTCDICNKQYKYLRALEQHKDKGHHGMSDQKYKCESCDKTLFSLSGYNLHLKKHEGAYTVRCAFCDRGFFSNSTYRLHLGSKHGKSDYVCDICGRHLFSQTSLNNHRMTHEEGYKDKPKSQCAICEKWFASEKTLRVHIYTRHECSRCICDICGKELNNKKALQTHTNIHLGLKPYICSYCGRGFADKTTLTCHIRTHTGERPYCCDVCGKRFAQPGAFKIHKRKHSGDKPFQCELCKEAFISSSALNTHFKSKHKVMDYFNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -