Bgla028602.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:1021070-1023955[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.24 13 7.4 1.6 3 20 33 50 31 52 0.91
2 25 0.62 35 6.0 0.9 2 23 82 100 81 100 0.92
3 25 2.9e-06 0.00016 22.8 5.1 1 23 106 128 106 128 0.99
4 25 1.9e-06 0.00011 23.4 2.2 1 23 134 156 134 156 0.98
5 25 9.2e-05 0.0052 18.1 1.6 1 23 162 184 162 184 0.99
6 25 3.1e-07 1.8e-05 25.9 1.9 1 23 190 212 190 212 0.98
7 25 0.0041 0.23 12.9 1.1 3 23 220 240 218 240 0.95
8 25 1.2e-06 6.8e-05 24.0 3.3 1 23 246 268 246 268 0.99
9 25 0.0087 0.49 11.9 3.8 1 23 274 296 274 296 0.95
10 25 0.00018 0.01 17.1 2.4 3 23 304 324 302 324 0.97
11 25 0.093 5.3 8.6 5.6 1 23 327 349 327 349 0.97
12 25 1.5e-05 0.00086 20.5 3.1 1 23 572 594 572 594 0.97
13 25 3.5e-06 0.0002 22.5 6.1 1 23 600 622 600 622 0.98
14 25 9.6e-05 0.0055 18.0 1.6 1 23 628 650 628 650 0.99
15 25 3.5e-07 2e-05 25.7 2.6 1 23 656 678 656 678 0.98
16 25 7.9e-06 0.00045 21.4 1.0 3 23 686 706 684 706 0.96
17 25 2e-07 1.1e-05 26.5 3.5 1 23 712 734 712 734 0.99
18 25 2.4e-05 0.0014 19.9 0.4 1 23 740 762 740 762 0.98
19 25 0.0068 0.38 12.2 0.4 1 23 768 790 768 790 0.95
20 25 0.0001 0.0057 18.0 1.6 1 23 796 818 796 818 0.96
21 25 0.00014 0.0079 17.5 6.8 1 23 824 846 824 846 0.98
22 25 5e-05 0.0028 18.9 0.0 1 23 852 874 852 874 0.97
23 25 1.9e-05 0.0011 20.2 0.8 1 23 880 902 880 902 0.99
24 25 0.083 4.7 8.8 0.9 1 23 908 930 908 930 0.92
25 25 3.4e-07 1.9e-05 25.7 1.5 2 23 936 957 935 957 0.97

Sequence Information

Coding Sequence
atggaAGAAAAGGAAGAAAAAGAACAAGAAGTAAAGTTTGAGGTTAAAGAAGAATTGAACACAGCATCCACCAGTTATTCCCAATCCGATCAAATATGCATGGTTTGCGGAAAATGCTTCCTATCTGAAAGTTCTTTTAAAGCGCACGAGTGCGTTAAAGACAACTACATGGAGGACTTGCTAAAAGTCGAAATAAGCGAACTGAAAGATCCACCGATGAAGAATAAGCCATCAAAGAAGACTAAATGTACTGTTTGCGACCTATCTGTGCGAAATATGACACGCCATATGCGCATACATACGTCAGAAAGACCTTTCCAATGTACGCACTGTAATAAAACGTTCACACTTAAACATAATTTAGAAGCGCACATCTTGACGCACACCGGCGAACGTAATTTCACATGCGAACAGTGCAACAGAAAATTCTCGCAAAGTAAAAACCTAAAAATGCATATGTTAGTGCACACGGGTGTAAAAGCGTATAAGTGCACTTTTTGCGAAAGGAGTTTTGCACTGAAAAGCACGCTGAGCGGACATCTGCGCACGCACACCGGCGAAAAACCGTTCGTTTGCCAGGTGTGCGGAAAACAGTTTACTGTCAAGCATAACTTGGCGAAGCATATCCGCACGCACAATCCGCAAAAACCGCACTTGTGCTCGATTTGCGGCAAAGGTTTCGCACTGAAAGGATACTTGGATATGCACTTTCGTAGACACTCCGGGTTTAAAAAATACCAGTGCGAAAGGTGCGACAAATCGTTCACGACTAAAGATAATATGAACAACCATTTCCGCACGCATACGGGAGAGAAACCATTCGCGTGCCACCTGTGCGGAGAAAGCTTTATGAAGAGGCAATTTCTGCATAAACACATGGTTTTACACGGTGCGGAAAAACCTTGTTTGTGTACAGTGTGCGGTAAAGGATTTAGGACGAAAATGTACCTAGATCAGCATATGCTTAAACATTTTCCGCACACTTGTTCGTATTGTAGTGAAGGTTTCACCAATAAGATGGAATTGGAGTGTCATTTCCGCACGCACATTGAAGAAAAACTGTTGAAGTACAATGCGAGCGGAACTTTTGTCGCACACGGTCATCTGAGCGATCAATTTCAAACACCCAGTGAAGTAAATAACTTTGTTTTTAGTTTGCAGATGAAAGAAgagttacaaaaaataaatgaaaataaactaaaactaGCTGAAATCAAACTAAAAGAAGCTGAAAATAAACAAGAAACAATTGAAACCAAACAAGAAACAATTGATCCAGATGATGAAACAATTGATCCGGATGACCAACCTTTATGCCAAAGAATCGAAGAAATAAAAAGAGAAAAcgaagaaaaagttaaaaaggaaAACGAAGAAAAAGTGAAAAGAGAAAGcgaagaaaaagttaaaaaagaaatcaaaaaagaaaacgTAAAGGAATCGAACAAATCAACAGATAAAAATAGAACCACTAGCGAAGAATACTTTTCTTCCGATGATTCTTTCAAATCTAACGATTGTGATAAAGACATGGAGGACTTTTTGAAAGTCGAAATAAACGAGGTGGGAGATGAGATCGACAATTACGAACCTGAAGAAGACTCCAACTACGAACCACCTCGAAATCCAGTAAAGAAGCACAAATGTAGCGTTTGCAATCATTTAGTGCATAACGTGCGACGCCATATGCGTATACATACGTCAGAGAAGCCTTTCGTATGCACATACTGTAACAGAGCCTTTACACTTAAGCACAACTTAAAAACGCACATGGTAATGCACACCGGCGAATTTAATTACATATGCAAGCATTGCAGCAAAGCGTTTTCGCatagaaaaaatctaaaaaaacacaTGTTAGTACACACAGGAGTAAAAAACTACAAGTGCACCTTTTGCGAAAGATCCTTCGCACAGAAGAACACTCTAGACGGCCATTTGCGCACGCACACCGGTGAAAAGCCGTTCCCTTGCTCGGTTTGTGGGAAACAATTTTCAGTTAAGCACAATTTAACAAAGCATTTACGCACGCACAATGCGGAAAAAACGCACTTGTGCCCGATTTGTGGGAAAGGATTCTCCCAGAAAGTTTACTTGGACACCCATTTGCGCAGACACGCCGGGATCAAACCGTATCAGTGCGACACGTGCCAAAAATCCTTCACGACGAGAGACCATCTGACCAACCATATCCGCATTCATACGGGCGATAGACCATTCGTGTGCGATTCGTGCGGTAAAAGTTTTGCGCAAAGATACATTCTGCAGAAACACATGGCGACGCACGGCGGAGAAAAGCCATTTTTGTGCACTGTGTGCGGAAAAGGATTTGCGGCAAAAACGTATCTGGATCAGCATTTTATGAGGCACACTGGTAACTTTCCGCACGCCTGTACGTTTTGCAGCAAAGGTTTCATGACAAAATCGGATCTAGAAGGTCACATCCGCACGCATACCGGCGAAAAACCGTTCGAATGCCATAAGTGCGATAAAAAGTTTTCCTCGCacggaaatttaaaatttcatattcgCACGCACAGCGAGGAAAGGAAGTATGCTTGTCCAGTGTGCGGGAGAAGATTTGCCGTCAAAAACTATTTGGACAGACATATCATCATTCATTCTGCGCACAAACCTTACCAGTGTTCGTTTTGTGATCAAGGATTTATCAGAAAGTCGGCTTTGGTGGACCATACCCGCAAACATACAGGCGAAAGGCCTTTTGCCTGCACACTGTGCGATAAAAGGTTTGCGGTGAAAAAATCCATGGAGTTTCATGTCACCACGCATAGTGGTGAAAAAGTTATGTGCAATATATGCCAGAAAGGATTTTCCTCGCGAAGTTATTTGCGTAAACATATGCGATCGCATGGCTTAACAGTTTAA
Protein Sequence
MEEKEEKEQEVKFEVKEELNTASTSYSQSDQICMVCGKCFLSESSFKAHECVKDNYMEDLLKVEISELKDPPMKNKPSKKTKCTVCDLSVRNMTRHMRIHTSERPFQCTHCNKTFTLKHNLEAHILTHTGERNFTCEQCNRKFSQSKNLKMHMLVHTGVKAYKCTFCERSFALKSTLSGHLRTHTGEKPFVCQVCGKQFTVKHNLAKHIRTHNPQKPHLCSICGKGFALKGYLDMHFRRHSGFKKYQCERCDKSFTTKDNMNNHFRTHTGEKPFACHLCGESFMKRQFLHKHMVLHGAEKPCLCTVCGKGFRTKMYLDQHMLKHFPHTCSYCSEGFTNKMELECHFRTHIEEKLLKYNASGTFVAHGHLSDQFQTPSEVNNFVFSLQMKEELQKINENKLKLAEIKLKEAENKQETIETKQETIDPDDETIDPDDQPLCQRIEEIKRENEEKVKKENEEKVKRESEEKVKKEIKKENVKESNKSTDKNRTTSEEYFSSDDSFKSNDCDKDMEDFLKVEINEVGDEIDNYEPEEDSNYEPPRNPVKKHKCSVCNHLVHNVRRHMRIHTSEKPFVCTYCNRAFTLKHNLKTHMVMHTGEFNYICKHCSKAFSHRKNLKKHMLVHTGVKNYKCTFCERSFAQKNTLDGHLRTHTGEKPFPCSVCGKQFSVKHNLTKHLRTHNAEKTHLCPICGKGFSQKVYLDTHLRRHAGIKPYQCDTCQKSFTTRDHLTNHIRIHTGDRPFVCDSCGKSFAQRYILQKHMATHGGEKPFLCTVCGKGFAAKTYLDQHFMRHTGNFPHACTFCSKGFMTKSDLEGHIRTHTGEKPFECHKCDKKFSSHGNLKFHIRTHSEERKYACPVCGRRFAVKNYLDRHIIIHSAHKPYQCSFCDQGFIRKSALVDHTRKHTGERPFACTLCDKRFAVKKSMEFHVTTHSGEKVMCNICQKGFSSRSYLRKHMRSHGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-