Bgla030287.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294053.1:26345455-26355649[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.3e-06 0.00019 22.6 0.7 1 23 174 196 174 196 0.97 2 23 2e-05 0.0011 20.2 3.7 1 23 202 224 202 224 0.98 3 23 3.6e-06 0.0002 22.5 3.8 1 23 230 252 230 252 0.98 4 23 3e-08 1.7e-06 29.0 0.7 1 23 258 280 258 280 0.98 5 23 7.3e-07 4.1e-05 24.7 0.9 1 23 286 308 286 308 0.99 6 23 6.9e-06 0.00039 21.6 0.9 1 23 314 336 314 336 0.99 7 23 2.3e-05 0.0013 20.0 2.2 1 23 342 365 342 365 0.96 8 23 0.0032 0.18 13.2 4.5 1 23 371 393 371 393 0.98 9 23 0.00027 0.015 16.6 8.1 1 23 555 577 555 577 0.97 10 23 0.00017 0.0095 17.3 1.3 1 23 583 605 583 605 0.98 11 23 0.0002 0.011 17.0 5.3 1 23 611 633 611 633 0.98 12 23 1.6e-05 0.00093 20.4 0.7 1 23 639 661 639 661 0.98 13 23 5.7e-06 0.00033 21.9 1.2 1 23 667 689 667 689 0.98 14 23 1e-05 0.00059 21.1 0.7 1 23 695 717 695 717 0.99 15 23 0.00011 0.0063 17.8 1.5 1 23 723 746 723 746 0.97 16 23 5.4e-05 0.0031 18.8 1.7 1 23 752 774 752 774 0.99 17 23 0.003 0.17 13.3 2.6 1 23 970 993 970 993 0.94 18 23 2.1e-05 0.0012 20.1 1.6 1 23 999 1021 999 1021 0.98 19 23 2.8e-05 0.0016 19.7 4.9 1 23 1027 1049 1027 1049 0.98 20 23 3.5e-05 0.002 19.4 0.2 1 23 1055 1077 1055 1077 0.98 21 23 0.00023 0.013 16.8 2.2 1 23 1083 1105 1083 1105 0.98 22 23 3.6e-06 0.0002 22.5 0.5 1 23 1111 1133 1111 1133 0.98 23 23 3.3e-06 0.00019 22.6 1.3 1 23 1139 1162 1139 1162 0.97
Sequence Information
- Coding Sequence
- ATGGAGCCTTTAgatctagaaaatatttgtagaatatgtttaaataaagatcCAGTAAAGAAGTTAAATGCTAAACATAAGGTATTCAAAGTGGATTTCTATTCTATGTTGAATGATTGTGCTTCAGTTGAGgcTCAAACAGACGATGATTTACCTtctaaaatgtgtaaaaaatgcGAGAAAGCTCTAGTAAATCATTATAAATTTCGTCAATCTGTGAAAGAAAATGACACAAAGTTAAAACAAACAGTTGAAGAAAAGAAAATCATAGCCTTACAAGATGATTTaccaataaaaagtttattttttaaaactgaagAGAAAGTTGAAGTTAAGGaggaaaatgaagaaaataatgacAATAGCAACAATGATGATATTAATGACAACAATGATGATAACGACTCTAACTATTCTGACGAAGCACCCGATCCCACGGATGTTGTTAAAACGGAATTTAGCGAAACACAAACAACTATAATACGTACCAAAAGTGGccggaaaaaaattaaaggtgtaTTTCAATGTGATGTTTGTGgtaaagtttttgattttaaagatAATCTACGTCAACATAAAGCATCTCACAGTGAAGAAAGGCCATACAAGTGTCCAGTGTGTCAAAAAGGATTTAAAACAAGTAGCGATTTATGCGAACATAAGAAATATCATACAGgtGAAAGAAAATACCATTGCACAGTATGtgacaaaaaatttatagtgaGCCGCAGTTTAAGAAGACACATGAGGACTCACACAGGAGAAAGGCCATACATGTGTTCGTATTGTGGGAAATCCTTTGCAACATCGTCAACTTTACAgGTTCATATTCGTAGCCACACTGGCGTCATGCCTTACGAATGTAAAGTATGCAACAAGAAATTTACCCAAGAATCGGGCCTTCGCGCCCACCGAAGGGTTCACACAGGCGAAAAATTGTTTACCTGTTCTTATTGCGGCAAATCCATGGCGACATCGACCAatttgactatacatattagaAGACATACTGGAGAATTGCCCTTTACTTGTCATATTTGTCAAAAAGGCTTTACTAATTCGGGAGACATGAAGAACCATATAAAgcTAACACATAACAAAGAAAAGAATTACGAGTGTCACATTTGTCATAACTCGTACAGTAAAAAGCAATATTTGAACGATCACCTAATCTCCCACACAGATGAAAGGCCCGAAGCTCAAACAGATGATAGTTTACCATccaaaatgtgtaaaaaatgtgaaaaggCTTTAGTGAGCCATTACAAATTTCGCCAATCTGTAAAAGAAAATgatattaagttaaaagaaacaATTATATTAAAGAACAACAAAGCTTTAGAGGATCAAACCATAAAAACTGAGGCAAAAGTAGAaattaaaaaggaaaataaagaaaacgaGGAAGATAATGAAGAATATGAACTAAGTCAAATTAAAGATACACCTTCtgaagaaaatataataaaatttaaacaaataatcaaaccaaaaaaagcttttcacgatttactaataaaaactgaagataaaattgaaattaaacaagaaaataCCAATGATAAAACTGAAAGCAGAGTACTGGATAATAATCCCAAATCAGTAGATTTTACAGCTGAACAAAATGGTAATGAAATTACTACAGAGGAGAAAAAAGGGCAGTTTCAATGTGATACTTGTGATAAATGTTTtgataataagaaaaatttacgtCAACACAAGCAACACCATAGTTCTGAAAGACCTTATAAGTGTCAGATTTGTGAAAAAGGATTTAAAACTGGTGGAGATTTGTCTCGACACAAAAAATATCACTCAGgAGAGAGAAAACATGAATGCaacatatgtcaaaaaaaattcataataagTTCGCATTTACACGACCATATGAGAATTCACACTGGAGAAAGGAAATTCATGTGTTCTTATTGCGGAAAAGCGTTTGGAACTGCCACTTTTTTGTCTAGACATACGCGAGTGCATACGGGGATCAAGCCATTTGAATGTGACATATGTCAAAGGAAATTCAGCCAAAAATCTGGCTTGGAGTCGCATAACAGGACACACACAGGCGAGAAACTGTACACATGTTCTTATTGTGGTATATCCATGACAACGTCATCTAGTTTAACTGTGCACATTCGTCGACATACCGGGGAATTGCCATATAAGTGCCATCTATGTGAGAAAGGTTTTACTACTTTGGCGTCCATGAAAAGTCATATAAAgcTGGGGCATAACAAAGAAAAGGACTACCAGTGTCAAATTTGCCATAAAGCATACAGCATCAAACAAAATCTAAAAGAGCATCTAGCTACGCACTCGGAAGAGCGTAATGAGGCATGTATGAATGATAGTTTACCATCTAAAATGTGCAAACAATGTGAAATAGCCTTAGTTACTCATTACAAGTTTCGTCAATCTGTAAAAGAAAatgatttaaagttaaaacaaacaaagaaGCACATAGAATTACAACATTTACCAATAAACTTAAAAGaaacagttaaaattaaaaaggagAATGTAAAAGACAATGAAAATATGAATAATGAATCTGAACAAATGGATCTTGAAAACATACCTGTGGaagtaaaatatgaaaatatgataATGTTACATCAAACTGAATCAATGAAAAATAAAGGTTTGCAAGAGCAACTGATAAAAACAGAAGATGAACAAAATATTGAAGATAATATGAGTGTCAAGACAGAAGTAGAAGATGTTGTTCCTTATGATGTTCCtgattttgttataatatataATCAAACAAGATCAAATACTGACCAAGAAACAAAGAACAAAGCAGATATCAATCAAATGACTAAATATGGAAGGAAAGGATCAGACATGGAAGATGAAGTAAAGCTTACTAAATCTGGCAAAGAAATAATTAAAGGTCTGTTTGCATGTGATAGTTGTGATAAACGGTtcgacacaaaaaaaagtttagttcAACACAAACAACATGTGCATACTACAGAGAGACCCTACAAATGTCCAGAATGTGAAAAGGAATATAAAACAAGAGGTGATTTATCTAGACACAAAAAATATCACACAGGAGAGAGAAATCACGAATGCGCTACATGTAAAAAAACATTCGTATTAAGCTCTCATTTAAATCAGCATATGCGAACTCATACCGGTGACAGAAAATTCCCGTGTTCCTATTGTGGAAAGGCGTTTGGAACTGCCGCTTTTTTGTCCAGACACACCCAAATCCATACTGCCGACAAGCCACACGAATGTGACGTATGTCATAGAAGATTTAGCGAGGAATCTGGATTGGTAGCCCATAAAAGAACGCACACAGGCGAAACACTGTTCGCTTGTCCTTACTGTGATAAATCAATGACAAGTTCGTCTTATTTAACCATACACATTCGTACACACACTGGAGAATTACCATATAAGTGCCATCTATGCGAGAAAGCATTCACTAATTCAGGGTCCTTGAAAAGTCatataaatcttggACATAAAGAAAGGAATACACACTTGGATGATCAACCTGGAGTGTGTGAAGAAACGATGAATTAG
- Protein Sequence
- MEPLDLENICRICLNKDPVKKLNAKHKVFKVDFYSMLNDCASVEAQTDDDLPSKMCKKCEKALVNHYKFRQSVKENDTKLKQTVEEKKIIALQDDLPIKSLFFKTEEKVEVKEENEENNDNSNNDDINDNNDDNDSNYSDEAPDPTDVVKTEFSETQTTIIRTKSGRKKIKGVFQCDVCGKVFDFKDNLRQHKASHSEERPYKCPVCQKGFKTSSDLCEHKKYHTGERKYHCTVCDKKFIVSRSLRRHMRTHTGERPYMCSYCGKSFATSSTLQVHIRSHTGVMPYECKVCNKKFTQESGLRAHRRVHTGEKLFTCSYCGKSMATSTNLTIHIRRHTGELPFTCHICQKGFTNSGDMKNHIKLTHNKEKNYECHICHNSYSKKQYLNDHLISHTDERPEAQTDDSLPSKMCKKCEKALVSHYKFRQSVKENDIKLKETIILKNNKALEDQTIKTEAKVEIKKENKENEEDNEEYELSQIKDTPSEENIIKFKQIIKPKKAFHDLLIKTEDKIEIKQENTNDKTESRVLDNNPKSVDFTAEQNGNEITTEEKKGQFQCDTCDKCFDNKKNLRQHKQHHSSERPYKCQICEKGFKTGGDLSRHKKYHSGERKHECNICQKKFIISSHLHDHMRIHTGERKFMCSYCGKAFGTATFLSRHTRVHTGIKPFECDICQRKFSQKSGLESHNRTHTGEKLYTCSYCGISMTTSSSLTVHIRRHTGELPYKCHLCEKGFTTLASMKSHIKLGHNKEKDYQCQICHKAYSIKQNLKEHLATHSEERNEACMNDSLPSKMCKQCEIALVTHYKFRQSVKENDLKLKQTKKHIELQHLPINLKETVKIKKENVKDNENMNNESEQMDLENIPVEVKYENMIMLHQTESMKNKGLQEQLIKTEDEQNIEDNMSVKTEVEDVVPYDVPDFVIIYNQTRSNTDQETKNKADINQMTKYGRKGSDMEDEVKLTKSGKEIIKGLFACDSCDKRFDTKKSLVQHKQHVHTTERPYKCPECEKEYKTRGDLSRHKKYHTGERNHECATCKKTFVLSSHLNQHMRTHTGDRKFPCSYCGKAFGTAAFLSRHTQIHTADKPHECDVCHRRFSEESGLVAHKRTHTGETLFACPYCDKSMTSSSYLTIHIRTHTGELPYKCHLCEKAFTNSGSLKSHINLGHKERNTHLDDQPGVCEETMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -