Basic Information

Insect: Brachypterus glaber
Gene Symbol: -
Assembly: GCA_958510825.1
Location: OY294047.1:53135189-53138113[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 1.2e-06 6.8e-05 24.0 4.1 1 23 13 35 13 35 0.97

2 22 3.3e-07 1.9e-05 25.8 0.5 1 23 41 63 41 63 0.99

3 22 3.9e-07 2.2e-05 25.5 1.1 1 23 73 96 73 96 0.96

4 22 4.4e-07 2.5e-05 25.4 1.5 1 23 357 379 357 379 0.97

5 22 4.9e-07 2.8e-05 25.2 1.6 1 23 389 411 389 411 0.97

6 22 2.9e-06 0.00016 22.8 2.2 1 22 421 442 421 442 0.95

7 22 3.1e-06 0.00018 22.7 1.0 1 21 453 473 453 474 0.94

8 22 2.7e-06 0.00015 22.9 2.7 1 23 485 507 485 507 0.98

9 22 1.2e-05 0.00069 20.8 2.5 1 23 516 539 516 539 0.98

10 22 1.5e-05 0.00083 20.6 0.3 1 23 569 591 569 591 0.97

11 22 3.1e-05 0.0018 19.6 0.4 1 23 603 625 603 625 0.95

12 22 0.00019 0.011 17.1 1.3 1 23 633 655 633 655 0.96

13 22 8.8e-06 0.0005 21.3 0.1 2 23 667 688 666 688 0.97

14 22 0.17 9.4 7.8 4.9 1 23 694 717 694 717 0.97

15 22 0.0043 0.25 12.8 0.8 1 23 723 745 723 745 0.96

16 22 6.8e-05 0.0039 18.5 2.7 1 23 752 774 752 774 0.98

17 22 1.6e-06 9.2e-05 23.6 0.4 1 23 780 802 780 802 0.98

18 22 2.5e-08 1.4e-06 29.3 1.3 1 23 808 830 808 830 0.98

19 22 8.8e-05 0.005 18.1 0.4 1 23 836 858 836 858 0.98

20 22 0.0001 0.0058 17.9 0.1 1 23 864 886 864 886 0.98

21 22 0.0065 0.37 12.3 4.2 1 23 893 915 893 915 0.98

22 22 1.4e-05 0.00079 20.7 2.3 1 22 921 942 921 942 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	1.2e-06	6.8e-05	24.0	4.1	1	23	13	35	13	35	0.97
2	22	3.3e-07	1.9e-05	25.8	0.5	1	23	41	63	41	63	0.99
3	22	3.9e-07	2.2e-05	25.5	1.1	1	23	73	96	73	96	0.96
4	22	4.4e-07	2.5e-05	25.4	1.5	1	23	357	379	357	379	0.97
5	22	4.9e-07	2.8e-05	25.2	1.6	1	23	389	411	389	411	0.97
6	22	2.9e-06	0.00016	22.8	2.2	1	22	421	442	421	442	0.95
7	22	3.1e-06	0.00018	22.7	1.0	1	21	453	473	453	474	0.94
8	22	2.7e-06	0.00015	22.9	2.7	1	23	485	507	485	507	0.98
9	22	1.2e-05	0.00069	20.8	2.5	1	23	516	539	516	539	0.98
10	22	1.5e-05	0.00083	20.6	0.3	1	23	569	591	569	591	0.97
11	22	3.1e-05	0.0018	19.6	0.4	1	23	603	625	603	625	0.95
12	22	0.00019	0.011	17.1	1.3	1	23	633	655	633	655	0.96
13	22	8.8e-06	0.0005	21.3	0.1	2	23	667	688	666	688	0.97
14	22	0.17	9.4	7.8	4.9	1	23	694	717	694	717	0.97
15	22	0.0043	0.25	12.8	0.8	1	23	723	745	723	745	0.96
16	22	6.8e-05	0.0039	18.5	2.7	1	23	752	774	752	774	0.98
17	22	1.6e-06	9.2e-05	23.6	0.4	1	23	780	802	780	802	0.98
18	22	2.5e-08	1.4e-06	29.3	1.3	1	23	808	830	808	830	0.98
19	22	8.8e-05	0.005	18.1	0.4	1	23	836	858	836	858	0.98
20	22	0.0001	0.0058	17.9	0.1	1	23	864	886	864	886	0.98
21	22	0.0065	0.37	12.3	4.2	1	23	893	915	893	915	0.98
22	22	1.4e-05	0.00079	20.7	2.3	1	22	921	942	921	942	0.95

Sequence Information

Coding Sequence: ATGATACACATGCGTACTCATACTGGGGAAAAACCGCATCATTGTTCAGTTTGCGGAAAAAACTTTGCGAGAAAACCCGATTTAACCAAACATATGCGCACTCATACTGGCGAGAAACCATACGTTTGTACTTATTGCGAAAAAGCATATGCAGATCGGTCCAACCTCAATCAACACATACGATCTCACACTGGTGAAAAAAAAGGCATAAAACGCTATGCTTGCCCGAACTGTAACAAAACATTTACTTATGAATCTAATCTACAGCAACACATACGCCAGCGCCATACTCAAGAACCGGAAGAAATAAAAGATCCTGTAGTTCCCCAAAAACCTTCGACAGATCAAATAAATCCATCGCAGTATATATTACCGACTCTGCCGGTAATAGAAAAACGTGCGGAAGAACCTACTAGTTTCGAAAAAGCGTTCGTAGATCCTTTTAACATAGTACAACACTTTTTATCGCACGCTCAGGCGCAAGATAAACGGTACAGTTACGAAAAAACGCTTGAACAGACGCTTAGTAACGAGAAACAGGTACCAATGCGGAATGTTGAGAAACCTATGTATCCTGACCAAACGTATTTACCACACAGTTTGCTAAACATAGGAGAAAGGCGTGCGGAGAAACCTTACATGCCTCCCCAACAAATGAATTATGAGAAAACGTTCGAAGAACATTTAAATATGACGCAAAAACAACAGTTTTCGATGCCAAGTTACGAAAAACCAAAACAGCAATTGTTTCCTATGTCGAGTTACGAAAAACCGAAACGGCCACAGTTTACTTTGCCGAGTTATGATAAACCTTTCCCAGTACAGACTAATCTGATGGATATGCTTAGAGAAAACAAACCGTTTGGTTTGACAAATTACGATAAAAGTTACGAGAAACCGTATGAAATGCACAGCAATAGTATACAAAGTATGGATAACGAGCCTGATCTTAGCGGTAACGACAGTGATAGGTCTTTCGGGGGTTATATGGAATACGATAACAAACCTTACGAACAGCAAAATATTGCCCAAGTTCCGGATGTAatagaaaaacaaaaagaaaaaccatATGCGTGTACTTATTGCGGGAAAAAATTCGTGTATAAAACAAATCTAACGCAACATATTAGATTGCATACCGGGGAAAAGAGGGGGGAAAAGCCATTTGCTTGTCCTCACTGTAATAAAACCTTTGCGTATTTGTCAAACTTGCAACAACACATTCAGTCGCATAGCGATGAAAAACGTGCGGAGAGACCGTACGCTTGTACACATTGCGACAAAAAGTTCAAATACAGATCAAATTTGATGCAACATATACGTTCGGTAACCGGCGAAAAACGTGCGGAAAAACCTTTTGCGTGCACACATTGCGACAAAACATTTGCTTATAAATCGAACCTTATGCAACATATACAATCTATAAGCGGGGAAAAACGAGGAAATAAAACGTACCCTTGTCACTTGTGCGATAAAAAATTCTCGTATAGTTCCACCCTTACGCAACATATTTTGTCGCATACCGGTGAGACGTGCGAAAAACCGTTTAAATGTCACTTGTGCAATAAAGGTTTTGCGTATAAGTGGAATTTAACGCAACATGTGCGAATCAGAcacaaaaattacgaaaaagcTTGTGCGGAGTTGTTGAATATAACGCAAGATATTTTATCGCATCCCGGACAACTGgataataaaataactttttcttgTACACAATGCGACAAAACGTTTACCGACCAGCCGCTTCTAGCGCAACATATTGCACAGCATTTCGACGAGAAAACtataaagaaagaaaaattgttCAACTGCGAAAAGTGCGATAAAACGTTTGCGAACGAGTCCACTTTAGTTCGGCACTCTGCCATACACGACGCTGCGTCGGAAAAAGTTTTTACGTGCGATCAGTGTAGTAAATCGTTTAACGACGAAAATAAACTTACACAACATATATATTGGCACGCTTTGGAATCTGGCGTGGATAAAACTTCGTTGCCTTGCACGGAGTGCGATGAAACATTTGGGGACCAAGTAGCTTTAACGCAACATATGAGGTCGCACACGGGCGAAAAACGGTTCAAGTGCGATTGTTGCGAGCTAAGTTTTTCGTCGAAATTAGATTTATGCTCGCATTTGAACAAAGTGCATGTAGATGAATTGCCGCACCAATGTTCCATGTGCGAGTTTAGATTCGCTACAGAACCGTTACTGAACAAGCACGTTTTGGAGCACACGGGCGAAAAGAAACAGTTCCCATGTCCGCACTGCGAGAGAAGATGTGCGAGTAAACACGATCTAGCGGTTCACATAAGAATACACACCGGCGAAAAACCGTACGCGTGCGCTGTTTGCGACAAAGTTTTCACACGTAAACAAGATATAACGAAGCACATGCGCATTCACAGCGGGGAGAAACCTTTTAGCTGTAACTATTGCGATAAATCCTATGCGGACAAATCGAATTTATACGCGCATATGCGAACGCATACCGGcgagaaaaaatacaaatgcgATTTTTGCGATATGGGTTTCGGTTTAAAATCACAACTAAGTCGTCACATGATCATACATACCAGAGATAAACCGTTCGTTTGTAATATATGCGACGACGCCTTTCCGCAACAATCGTTGCTCGACAGACACATGATCTCACATACTGGCGACAAAAAGATCCATAAATGTCCGTACTGCGAGAAAAGATGGTCCCGTAGAAATGACATGCACATACATATCCGCACTCATACCGGGGAAAAACCGCACGTTTGCCCGCATTGCGAAAAAGATTTTACCCGTAAACCGGATTTGACGCGGCACATGCACACGTGCAGACAGGCAAAGCCGAATGTGGACGACCAGTCGGGTACGGCCGAATCGACCACTCTCGATTTGATGCAATACATGAAGATTGAGTTGGGGGACTAG
Protein Sequence: MIHMRTHTGEKPHHCSVCGKNFARKPDLTKHMRTHTGEKPYVCTYCEKAYADRSNLNQHIRSHTGEKKGIKRYACPNCNKTFTYESNLQQHIRQRHTQEPEEIKDPVVPQKPSTDQINPSQYILPTLPVIEKRAEEPTSFEKAFVDPFNIVQHFLSHAQAQDKRYSYEKTLEQTLSNEKQVPMRNVEKPMYPDQTYLPHSLLNIGERRAEKPYMPPQQMNYEKTFEEHLNMTQKQQFSMPSYEKPKQQLFPMSSYEKPKRPQFTLPSYDKPFPVQTNLMDMLRENKPFGLTNYDKSYEKPYEMHSNSIQSMDNEPDLSGNDSDRSFGGYMEYDNKPYEQQNIAQVPDVIEKQKEKPYACTYCGKKFVYKTNLTQHIRLHTGEKRGEKPFACPHCNKTFAYLSNLQQHIQSHSDEKRAERPYACTHCDKKFKYRSNLMQHIRSVTGEKRAEKPFACTHCDKTFAYKSNLMQHIQSISGEKRGNKTYPCHLCDKKFSYSSTLTQHILSHTGETCEKPFKCHLCNKGFAYKWNLTQHVRIRHKNYEKACAELLNITQDILSHPGQLDNKITFSCTQCDKTFTDQPLLAQHIAQHFDEKTIKKEKLFNCEKCDKTFANESTLVRHSAIHDAASEKVFTCDQCSKSFNDENKLTQHIYWHALESGVDKTSLPCTECDETFGDQVALTQHMRSHTGEKRFKCDCCELSFSSKLDLCSHLNKVHVDELPHQCSMCEFRFATEPLLNKHVLEHTGEKKQFPCPHCERRCASKHDLAVHIRIHTGEKPYACAVCDKVFTRKQDITKHMRIHSGEKPFSCNYCDKSYADKSNLYAHMRTHTGEKKYKCDFCDMGFGLKSQLSRHMIIHTRDKPFVCNICDDAFPQQSLLDRHMISHTGDKKIHKCPYCEKRWSRRNDMHIHIRTHTGEKPHVCPHCEKDFTRKPDLTRHMHTCRQAKPNVDDQSGTAESTTLDLMQYMKIELGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00244432;
90% Identity: iTF_00244432;
80% Identity: iTF_00244432;