Bgla028517.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294053.1:252137-266447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.9e-06 0.00028 22.1 2.9 1 23 168 190 168 190 0.97 2 24 0.00025 0.014 16.7 0.8 1 23 196 218 196 218 0.98 3 24 5e-07 2.9e-05 25.2 0.7 1 23 224 246 224 246 0.98 4 24 9.1e-07 5.2e-05 24.4 0.3 1 20 252 271 252 273 0.95 5 24 2.2e-06 0.00013 23.2 3.2 1 23 378 400 378 400 0.97 6 24 0.00098 0.056 14.8 1.4 1 23 406 428 406 428 0.98 7 24 9.1e-06 0.00052 21.2 4.2 1 23 434 456 434 456 0.97 8 24 5.5e-07 3.1e-05 25.1 6.4 2 23 471 492 470 492 0.96 9 24 0.019 1.1 10.8 3.0 1 23 498 520 498 520 0.98 10 24 7.4e-07 4.2e-05 24.7 1.1 1 23 526 548 526 548 0.98 11 24 9.9e-07 5.6e-05 24.3 0.2 1 23 554 576 554 576 0.98 12 24 6.3 3.6e+02 2.9 0.5 13 23 684 694 682 694 0.93 13 24 2.9e-05 0.0017 19.7 3.4 1 23 700 723 700 723 0.96 14 24 0.012 0.67 11.4 3.6 1 23 827 849 827 849 0.97 15 24 3.7e-05 0.0021 19.3 2.4 1 23 855 877 855 877 0.99 16 24 7.1e-07 4e-05 24.7 2.4 1 23 883 905 883 905 0.98 17 24 7.8e-07 4.4e-05 24.6 2.1 1 23 911 933 911 933 0.98 18 24 0.00042 0.024 16.0 1.9 1 23 938 960 938 960 0.98 19 24 2.3e-07 1.3e-05 26.2 3.1 2 23 967 988 967 988 0.97 20 24 3e-07 1.7e-05 25.9 0.4 1 23 994 1016 994 1016 0.98 21 24 1.1e-05 0.00062 21.0 2.0 1 23 1022 1044 1022 1044 0.98 22 24 1.6e-06 9.3e-05 23.6 0.9 1 23 1050 1072 1050 1072 0.98 23 24 0.00081 0.046 15.1 0.6 1 23 1078 1100 1078 1100 0.97 24 24 2e-05 0.0012 20.1 4.0 1 23 1106 1128 1106 1128 0.96
Sequence Information
- Coding Sequence
- ATGGaggatataaaaataaaaactgagtTGGAAGTCACAGTTAAGCAGGAAGTTGAAGACAATGAACATGAATTGAAATCATTTCCTAAAGAAGAAGTTCCAGATGAAGAACAAATAAAAACTGAGGTCAGAGACAGTAAATTAGGTATGgataacataaaaattattaaggaaGAGATGGAGGATATAAAAATTGAGATTGTACACCCTGAGGTCAAGAATCAGGTTAGTGAAAATGAGTCAGAAGTCAAAGTTAAGCAAGAAGTTTTTATTCCCCCTgaagaagaaataaaaattaaagctgAAGACAATTTGAAGGAATTGGAAGTCCCCTCTATAAAAGAAGACTTAATTCTCGATGAAGAGCAACTGAAAAATGATAATCTAGACGACTTATGTAtggttgattttaaaaatattaaggaaGAGATAATGGACAAAGAAGTtttagaagaagaaaaagaaaagttgAAATCAAATTTAGAACATACAAGAATACATTTTGCCTGCTtgtattgtaaaaaaacatttgcaCATAAGGGAAATTTAAGCAAGCATATAAATACGCACACGCGTAAGTGTTCTTTTATATGTGCGCATTGTGCCAAAGTATTTTTGCAGAAATCGCAACTAATCGAACATATCCGCACACATACAGGTGAAAGACCTTATCCATGTTCTGAGTGCGGAGAATCGTTTAAactaaaatctaatttaattaatcataaGCGTACGCACTCCCTAGAAAAACCTTTTGTCTGCTCGTATTGTGGAAAAGGATTTTCACAGAAGGGAAATTTAAGCAGGCATATGGATAATATAAAAACAGAGATTGTAGACGCTGAAGCTAAGAATGAGGTTAGTGAAACTGAGTTGGAAGTCAAAGTTAAGCAAGAACCTCACGAAGAGGAAATACAAATTAAAGTTGAGGATGATGCGAATGATTTGGAAGTCCCCTCTAAAGAAGAAGGATTAATCCTTGATCAAGAACAAATGAAAAATGATAATTTAGACGAGTTATGTATGGTTgacttcaaaaatattaaggaaGAAATAATGGACAAAGTAACTTTAGAAGAAGAAAAGGAAAAATTGAAATCAAATTTAGAAAAACATACAGGAGAAACACATTTTGCCTGCTCGTATTGCGAGAAAACTTTTGCACATCAGAGAAGTTTACGCAGGCATATAAATACACACACAAGCGAGTCTTCTTTTAATTGTACCTATTGTGACAAATTATTTTTACGTAACTCACGTTTAATAGAACATATCCGCACACACACGGGAGAAAGACCTTATTCCTGCACGGAGTGCGAAAAATCTTTCACGAATAAGTCGGCTTTAAATAAACACAAGCATAGTCACTCTTCAGATGTTAAGCATATGCTTCCTTCAGAAAGTCCGTGTACATGCTCTCATTGCGGAAAAACCTTCTCACGGCAGTCGAGTTTAAGCAGGCATATAAATACGCATACGCATGCGTCTTCTTTTATGTGTGCGCATTGTGCCAGATTATTTTTGCAGAAATCGCATCTTATCGAACATATCCGCACACATACAGGAGAAAAACCTTATCCATGTTCTGATTGCGGAGAATCGTTCAAACTAAAATCTAGTTTAACCAATCATAAGCGTACGCACTCTCTAGAAAAACCTTTTGTCTGTTTGTATTGTGGGAAAGGATTCGCACAGCAGGGGAATTTAAGCAGTCATATTAATACGCACACTCGTAAGTCTTTATTCAATTGCGAGATGGAGAATATAAAAATAGAGCTAGTGGACTTTAAACCTAAGAATGAGGTGAGTGAAAATGAGTTGGAAGTCAAAGTTAAGCAGGAAGTTTTCATTCCTGATGAAGAGGAAATAAAAATTCAAGTAGAAGACAATGAAAATGAAATGGAAGTGTCCCCTAAAGAAGAAAGTTTAATTCTTGATGAAGAGCAAATGAAAAATGATAATTTGGATCAGTTATGTATGGTTGATTTCAACAATATTAAGGAAGAGATATTGGACAAAGAAGTTTTAGAAgaagaaaaggaaaaaataaaatcaaatttagaAAAACATACTAACAAACATACAAAAGAAACACACTTTGCCTGCTCGTATTGTGAGAAAATATTTGCGCATCAGAGAAATTTACgcaggcatttaaaaaataaacacccGAaAGACCAAAAAATTAAGACTAGTGATAGTGATTTGAAAATTAAAGTTAAGCAGGAACTTCTGATTCCTTATGAGGAAGATATTAAACCTGAAGTTGAAGACAATAAAAACGAATTTTCCTCTAAAGAAGAAGTTTTAGTTCCAGATgaagaacaaataaaaaatgacaatttaGACGAGTTGTGTATGATTgactttaaaaatatcaagcaAGAGATAATGGACGAGGAAGTTTTAGATGAAGAAGaggaaaaattgaaattaaatttacaaacaTATACTAACACACATTCAAACGAATTATTTTTTACCTGCTCGTGCTGTGCCAAAAAGTTTTCAGATCAGACAAGTTTGAGCATGCATATAAATACACATATACAAAAGTCTTCCTTTAGGTGTGCGCATTgtgaaaagtcatttttaagtcAATCAGACCTAACCCAACATATTCGAATGCACACAAAGGAAAGACTTTTTTCTTGCTCTGAGTGCGGAAAAAGGTTCACACTAAACTCAAATTTAAACCAGCATAAGCGTACGCACTCTTCAGAACGACCTTTTGTCTGCTCGTATTGTGGGAAAACATATGGCCAGCAAGGTCACTTAAGCAGGCATATAAAAACGCACACGCGTGAATATTATAACTGTGCGCATTGTAACAAACCATTTTTAGATAAGTCAAGTTTAATTTTACACACCCGCACACATACCGGAGAAAAACTTAATTATTGCTCAGAGTGCGGAAAGTCGTTCacaaaaaaatcgcatttaatTTCGCATATCCGCACGCACACGGGAGAAAAGCCTTACCCCTGCTCCGATTGCGAAAAATCTTTTACTGACAGATCAGGATTAAGCAGACATATTTTGACACATACGGGGGAAAAACCCTATTCCTGCTCTGAATGCGGAAAATCGTTCACGCAAATGTCAAAATTGAACGAGCACAAGTACACGCACTCTTCAGAAGGGCCTTTTGTCTGTCCGCATTGTAATAGAACGTACACTTCTCCGGGATATTTGAAGGCTCATGTAAATACGCACACCCGtgaaaattcttttaattgtgaTCTTTGTGAAAAATCATTTATAAGGGGAACGGATTTGATGAAGCATAGTCTCACACATACCGGAGAAAAGCCACATGCCTGTTCACTGtgcgaaaaaaagtttgtgtatAGGACAAGTTTAAAACGGCACATGCGCACGCACATTGGCTAG
- Protein Sequence
- MEDIKIKTELEVTVKQEVEDNEHELKSFPKEEVPDEEQIKTEVRDSKLGMDNIKIIKEEMEDIKIEIVHPEVKNQVSENESEVKVKQEVFIPPEEEIKIKAEDNLKELEVPSIKEDLILDEEQLKNDNLDDLCMVDFKNIKEEIMDKEVLEEEKEKLKSNLEHTRIHFACLYCKKTFAHKGNLSKHINTHTRKCSFICAHCAKVFLQKSQLIEHIRTHTGERPYPCSECGESFKLKSNLINHKRTHSLEKPFVCSYCGKGFSQKGNLSRHMDNIKTEIVDAEAKNEVSETELEVKVKQEPHEEEIQIKVEDDANDLEVPSKEEGLILDQEQMKNDNLDELCMVDFKNIKEEIMDKVTLEEEKEKLKSNLEKHTGETHFACSYCEKTFAHQRSLRRHINTHTSESSFNCTYCDKLFLRNSRLIEHIRTHTGERPYSCTECEKSFTNKSALNKHKHSHSSDVKHMLPSESPCTCSHCGKTFSRQSSLSRHINTHTHASSFMCAHCARLFLQKSHLIEHIRTHTGEKPYPCSDCGESFKLKSSLTNHKRTHSLEKPFVCLYCGKGFAQQGNLSSHINTHTRKSLFNCEMENIKIELVDFKPKNEVSENELEVKVKQEVFIPDEEEIKIQVEDNENEMEVSPKEESLILDEEQMKNDNLDQLCMVDFNNIKEEILDKEVLEEEKEKIKSNLEKHTNKHTKETHFACSYCEKIFAHQRNLRRHLKNKHPKDQKIKTSDSDLKIKVKQELLIPYEEDIKPEVEDNKNEFSSKEEVLVPDEEQIKNDNLDELCMIDFKNIKQEIMDEEVLDEEEEKLKLNLQTYTNTHSNELFFTCSCCAKKFSDQTSLSMHINTHIQKSSFRCAHCEKSFLSQSDLTQHIRMHTKERLFSCSECGKRFTLNSNLNQHKRTHSSERPFVCSYCGKTYGQQGHLSRHIKTHTREYYNCAHCNKPFLDKSSLILHTRTHTGEKLNYCSECGKSFTKKSHLISHIRTHTGEKPYPCSDCEKSFTDRSGLSRHILTHTGEKPYSCSECGKSFTQMSKLNEHKYTHSSEGPFVCPHCNRTYTSPGYLKAHVNTHTRENSFNCDLCEKSFIRGTDLMKHSLTHTGEKPHACSLCEKKFVYRTSLKRHMRTHIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -