Bgla028952.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:6471028-6479808[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00024 0.014 16.8 0.8 2 21 354 373 353 374 0.93
2 25 5.5e-06 0.00031 21.9 1.0 2 23 382 403 381 403 0.97
3 25 1.6e-05 0.00092 20.4 1.8 2 23 408 429 408 429 0.97
4 25 0.00067 0.038 15.4 0.3 1 23 435 458 435 458 0.97
5 25 0.0014 0.08 14.3 7.3 1 23 463 485 463 485 0.97
6 25 1.2e-05 0.00069 20.8 3.6 1 23 491 513 491 513 0.97
7 25 0.00026 0.015 16.7 2.3 3 23 523 543 523 543 0.99
8 25 1.4e-05 0.00079 20.7 2.5 1 23 548 570 548 570 0.98
9 25 0.0046 0.26 12.7 1.7 1 23 576 599 576 599 0.97
10 25 1.7e-05 0.00097 20.4 3.4 1 23 604 626 604 626 0.97
11 25 6e-06 0.00034 21.8 0.5 1 23 632 655 632 655 0.98
12 25 2e-06 0.00011 23.3 0.3 2 23 888 909 887 909 0.97
13 25 2.7e-05 0.0015 19.8 2.5 2 23 916 937 915 937 0.97
14 25 1.6e-05 0.00089 20.5 0.3 2 23 942 963 942 963 0.97
15 25 0.0055 0.31 12.5 0.1 1 23 969 992 969 992 0.96
16 25 6.4e-06 0.00037 21.7 4.7 1 23 997 1019 997 1019 0.97
17 25 1.2e-05 0.00069 20.8 3.6 1 23 1025 1047 1025 1047 0.97
18 25 0.0002 0.012 17.0 1.8 3 23 1057 1077 1056 1077 0.99
19 25 2.4e-05 0.0014 19.9 1.8 1 23 1083 1105 1083 1105 0.98
20 25 0.00021 0.012 17.0 0.3 1 23 1111 1134 1111 1134 0.96
21 25 3.9e-05 0.0022 19.3 4.7 1 23 1140 1162 1140 1162 0.97
22 25 1.8e-06 0.0001 23.5 0.3 1 23 1168 1191 1168 1191 0.98
23 25 0.00014 0.0082 17.5 2.8 1 23 1197 1219 1197 1219 0.96
24 25 8.2e-08 4.7e-06 27.7 2.0 1 23 1225 1247 1225 1247 0.99
25 25 4.4e-05 0.0025 19.1 0.4 1 23 1253 1275 1253 1275 0.97

Sequence Information

Coding Sequence
ATGGAAGTTTATacccttgaagaaaaaaaacagaTCATTAGATATTACCACCAAGATCTCAGTCTTCGGGAATGTAGAGAATATTTTAACGATCTTTACCCAGAGAGGCCAATCCCAGCAGTTAGCAGAATCCGGGAAATTattaagaattttgaaaaatatggctGTTTATCGCCAATTCATCATAAAAGATCCGCGTTAATTGATGAGAAAATGCTTGACGCTTTAATTTATGATGGTGCTGATGAACAAAGATCCAGGCAGTCAACAAGAGAAACGGCTGAAGAGTTAGACGCGAACCAAactaggAAAAAACAATTATTGATGGCAGATTTAATGACTAAAATTGGGCATAATGAGCCTAACCTCTGTGAGGATCAGCATGAAGAAGAAACAATTTGTTTGAATGAAGATATGGAAACTGAAATTAAAGAACAGAATACTATTGATAAAATCATCAGCATGAAAGAGGAGCCATCTGATGAagaagaatttaaaaatgataaagaAATATCGAACGAACAAGTAATAAATAAAGACTGCAGCATTGATGACACTAGTGATATAAAAGAGGAACTAAATAATGAAGAAATATTGAACGAAGAAGTAATAATTGAAGACTGCAGCATTGATGATACTAGTAATATAAAAGAAGAACTAAATGAAACAGGAGTTAAAAATGAAGTCAGAGATGAAATATCAGACGGAAATCTTTGTGAAAGGTCTATTACTAGTTCATCAGATATTATTACGCATGCTAAGGAAAGGCTTGATAACATATTGCATCTGCAAGATgtgaaaattgaaattaaagaaCACAGTATTTTTGATGAAATCAACTTCATAAAAGAGGAACGATCTGatgaaaaagaatttaaaaatgaagacaTATCGAATGAAGAATTAAAAAGTCAAGACTACACCATGGATgacttttataatattaaagagAAACCAGATGATATtgaaatatatgaaatattcgACGAAAATCCTCAAGAAAACCATATTGCAAATTCCTCCGAAGATAATGTCACGTATGCAAATGAAAGTCCAGATTCCTGTACATATTGCAACAAATCCTTTAGAGACCCATTATCTTTAAAAGAGCATATCTGTATCTACACTGGTGAGAAACCTTTGCCATGTCCTTACTGTGATAAATGTTTTGCCGGTAGATATTCTTTAAAACAACATTTATTAACGCATAAGGAACCAAACACTTGTGATATTTGCCAAAAATCCTTTGAGACTGCCTCGTGTTTAAAAGATCATATGAATATCCATACCTGCCATAATCCATATACCTGCTCTAGTTGTGACAAATCATTCCCTCTCGAAGCTGAGCTGAATACGCACGTTATGCGTTTTCATACTGGAATCACACATTCATGCAGTTACTGTCAGAAAGAATTTAAAAAGACGTCGTGCTTGTATCGACATATTCGAATTCATACTGGTGAAAAACCATATTGCTGCTCGATTTGCCAGAGATCATTTTCGGATCCTTCCTCTTTGAGAAGACACAACCGCCAACATCAGGAGATTCTGGAGAAACCTCTCGGCTGTTCTGAATGCGAAGCATCTTTTTTCTCTAAGCacgcattaaaaaaacatatgcgTATTCATGGACTGAAGCCCTATTCCTGCTCGTATTGCGAAAGAAAGTTTTCTGagaagaaaaacttaaaaaaacacttACTCGTACACACCGATGAAAAACCATATTCTTGtagtttttgcgaaaaacaatttAAAGATACGCGTAAAGTGCGTATTCATATAAGAAATGTGCATGCAGTCAAGCCGCATTCCTGCATGTATTGCGAAAAAAGGTTTCCCGACAAGGCGACCTTGAAAAAGCACTTGCGTACACACACCGGTGAAAAGCCATATGTTTGCACTTATTGTGAAAAAGCATTCACAAATTCGACTGGTTTAAATATACATACACGTAGTGTACACACGGGAGAAAAGCTACATaaaaaagACAACTTATTGATGGcagatttaaaaactaaaattgggCATGATGAGTCTAACCTCTGTGAGGATCAGCAAGAATtaaaagaagaaataatttGTTTGAACGAAGATGTGGCAATTAAAACTGAAGAACAGGATATTACTGATAAAATCAACAGCATAAAAGAGGAACCATCTGATGGagaagaatttaaaaaagctgAAGAAATGTCGATTGAAGAAGTAATAATTAAAGACTACAGCATTGATGATACTAGTAATATAAAAGAGGAACTAAATGATACAGAAGTTAAAAATGAAGTCAGAGATGAAATATCAGACGGAAATCTTTGTGAAAGGTCTATTACAAGTTCATCAGATATTGTTGCGCATGCTGAGGAAAGGCTTGATAACATATTGCATCTGCAAGATgtgaaaattgaaattaaagaacacaatatttttaatgaaatcaaCGTCATAAAAGAGGAACGATCTGatgaaaaagaatttaaaaatgagGACATATCGAATgaagaattaaaaattcaaGACTACAGCATGGATGACTTCTATAATATTAAAGAGGAACCAGATGATATtgaaatatatgaaatattcgACGAGAATCCTCAAGAAAACCATATTGCAAATTCCTCAGAAAATAATGTTACGTATGCAAATGAAAGTCCAGATTCCTGTCCCTATTGCAATAAATCCTTTAAAGACCCATTATATTTAAAGGAGCATATCCGTATCCACACTGGTGAGAAACCTGTTTCCTGCCCTCACTGTGATGAATGTTTTGCCGGTAGATATTCTTTGAAACGACATTTATTAACTCATAAGGAACCAAACACTTGTGATATTTGCCTAAAATCCTTTGTTACTGCCTCATATTTAAAAGATCATATGAATATCCATACCGGACATAAGCCGTATGCCTGCTCTAGTTGTGACAAATCGTACCCTCTCGCAGCTGAGCTGAATTCGCACGTCATGCGTTTTCATACGGGAGTCACGCATTCATGCAGTTACTGTCAGAAAGTATTCAGAGATTTGTCGTCCTTGCATCGACATATTCGAATTCATACTGGCGAAAAACCATATTGCTGCTCGATTTGCCAGAGATCATTTTCGGACCCTTCCTCTTTGAGAAGACATAACCGCCAACATAAAGACATTCTAGAGAAACCTCACGGCTGTTCTGAATGCGAAGCATGCTTTTTTACTAAGGacgcattaaaaaaacatatacgtAGTCATTTGGGACTAAGGCCGTATTCGTGCTCATATTGCGAAAGAAAGTTTGCTGAGAAGAAGAACTTGAAAAAGCACCTACTCATACACACCGATGAAAAACCATATGCTTGcagtttttgccaaaaaccATTTAAAGATATGTCTGGCCTACGCGTCCATGTACGAAATGTGCATGCGGAAGTCAAGCCGCATTCGTGCATGTATtgcgaaaaaaagttttccgaCAAGACGACCTTGAAAAAGCACTTACGCGTACACACCGGTGAAAAGCCATACGTTTGCACTTATTGTGAAAAAGCATTCACAAATTCGTCTGGTTTAAGTTTACATATACGTAGTGTGCATACGGGAGTCAAGCCACATGTATGTAGTTATTGTCAAAAAGCTTTTGCTCATACAGGTGACCTAaagaaacacatttttatacaTACGGGAGAACGACCTTATAAATGTTCATCTTGTTCGAAATCTTTTTCGGATAAATCAAATTTGAGAATACATATGCGGATTCACACTCGAGAGAGACCATATTCTTGTAGTTTATGCGACAAAACTTTTATTAACGGGTCGGGTTTAAATAAACACATTGTCAAACATGATATGGTATGA
Protein Sequence
MEVYTLEEKKQIIRYYHQDLSLRECREYFNDLYPERPIPAVSRIREIIKNFEKYGCLSPIHHKRSALIDEKMLDALIYDGADEQRSRQSTRETAEELDANQTRKKQLLMADLMTKIGHNEPNLCEDQHEEETICLNEDMETEIKEQNTIDKIISMKEEPSDEEEFKNDKEISNEQVINKDCSIDDTSDIKEELNNEEILNEEVIIEDCSIDDTSNIKEELNETGVKNEVRDEISDGNLCERSITSSSDIITHAKERLDNILHLQDVKIEIKEHSIFDEINFIKEERSDEKEFKNEDISNEELKSQDYTMDDFYNIKEKPDDIEIYEIFDENPQENHIANSSEDNVTYANESPDSCTYCNKSFRDPLSLKEHICIYTGEKPLPCPYCDKCFAGRYSLKQHLLTHKEPNTCDICQKSFETASCLKDHMNIHTCHNPYTCSSCDKSFPLEAELNTHVMRFHTGITHSCSYCQKEFKKTSCLYRHIRIHTGEKPYCCSICQRSFSDPSSLRRHNRQHQEILEKPLGCSECEASFFSKHALKKHMRIHGLKPYSCSYCERKFSEKKNLKKHLLVHTDEKPYSCSFCEKQFKDTRKVRIHIRNVHAVKPHSCMYCEKRFPDKATLKKHLRTHTGEKPYVCTYCEKAFTNSTGLNIHTRSVHTGEKLHKKDNLLMADLKTKIGHDESNLCEDQQELKEEIICLNEDVAIKTEEQDITDKINSIKEEPSDGEEFKKAEEMSIEEVIIKDYSIDDTSNIKEELNDTEVKNEVRDEISDGNLCERSITSSSDIVAHAEERLDNILHLQDVKIEIKEHNIFNEINVIKEERSDEKEFKNEDISNEELKIQDYSMDDFYNIKEEPDDIEIYEIFDENPQENHIANSSENNVTYANESPDSCPYCNKSFKDPLYLKEHIRIHTGEKPVSCPHCDECFAGRYSLKRHLLTHKEPNTCDICLKSFVTASYLKDHMNIHTGHKPYACSSCDKSYPLAAELNSHVMRFHTGVTHSCSYCQKVFRDLSSLHRHIRIHTGEKPYCCSICQRSFSDPSSLRRHNRQHKDILEKPHGCSECEACFFTKDALKKHIRSHLGLRPYSCSYCERKFAEKKNLKKHLLIHTDEKPYACSFCQKPFKDMSGLRVHVRNVHAEVKPHSCMYCEKKFSDKTTLKKHLRVHTGEKPYVCTYCEKAFTNSSGLSLHIRSVHTGVKPHVCSYCQKAFAHTGDLKKHIFIHTGERPYKCSSCSKSFSDKSNLRIHMRIHTRERPYSCSLCDKTFINGSGLNKHIVKHDMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-