Bgla030288.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:26357653-26366495[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 3.6e-06 0.0002 22.5 5.2 1 23 171 193 171 193 0.98
2 26 5.5e-06 0.00031 21.9 1.2 1 23 199 221 199 221 0.98
3 26 1.8e-05 0.001 20.3 1.7 1 23 227 249 227 249 0.99
4 26 4.4e-08 2.5e-06 28.5 1.5 1 23 255 277 255 277 0.98
5 26 0.0001 0.0059 17.9 5.9 1 23 283 305 283 305 0.99
6 26 3e-06 0.00017 22.8 0.6 1 23 311 333 311 333 0.99
7 26 1.4e-05 0.00078 20.7 3.6 1 23 339 362 339 362 0.97
8 26 0.001 0.057 14.8 5.4 1 23 368 390 368 390 0.98
9 26 2.5e-06 0.00014 23.0 3.6 1 23 518 540 518 540 0.99
10 26 3.9e-06 0.00022 22.4 0.8 1 23 546 568 546 568 0.99
11 26 4.2e-05 0.0024 19.2 6.3 1 23 574 596 574 596 0.98
12 26 2.1e-05 0.0012 20.1 0.4 1 23 602 624 602 624 0.97
13 26 0.00015 0.0086 17.4 6.1 1 23 630 652 630 652 0.98
14 26 1.7e-06 9.5e-05 23.6 0.1 1 23 658 680 658 680 0.99
15 26 0.003 0.17 13.3 6.7 1 23 686 709 686 709 0.96
16 26 0.001 0.057 14.8 5.4 1 23 715 737 715 737 0.98
17 26 1.7e-05 0.00099 20.4 2.2 2 23 744 765 744 765 0.96
18 26 1.4e-05 0.00077 20.7 3.7 1 23 948 970 948 970 0.98
19 26 0.00037 0.021 16.2 5.1 1 23 976 998 976 998 0.98
20 26 1.8e-06 0.0001 23.4 4.1 1 23 1004 1026 1004 1026 0.99
21 26 3.3e-07 1.9e-05 25.8 0.8 1 23 1032 1054 1032 1054 0.98
22 26 2e-05 0.0011 20.2 2.8 1 23 1060 1082 1060 1082 0.99
23 26 0.00014 0.0082 17.5 1.1 1 23 1088 1110 1088 1110 0.99
24 26 1.3e-05 0.00073 20.8 1.6 1 23 1116 1139 1116 1139 0.96
25 26 0.0029 0.17 13.4 4.3 1 23 1145 1167 1145 1167 0.98
26 26 9.7e-06 0.00055 21.2 2.4 2 23 1174 1195 1174 1195 0.97

Sequence Information

Coding Sequence
atggaggctttagattttgaaaatatatgcAGAATATGTTTAGATAAGGGACCCAATAAAGAATTAAGTTTAAAACACAAGAAATTGGATGTTGattactattttttgttaaatgtttgTACTTCAATAAAAGCGGAAACAAACGATAGTTTACCATccaaaatgtgtaaaaaatgcgaaaaaacattaattaactattataaattcCGAAATTCGGCAATAGAAAATGATACAAAGTTAAAAGAGGTTATTGAAAGCaagaaaaacattgtttttctcAAAGAACccgaaaaaaataaagaaaactatgAAGTTAAAGAAGAAAAGcatgaaaatataaaagatcATGAGGACAGTGAAGATAATCATGATGATGGTGTAGAAAGTGACAGTAATGATGCTGATGAGTCCCAACCAGTAGTATCTATGTCTGAAATTGTCAAAGTTGAGCTGTCAACTGGTAACACAACAATCACAACAAAAGGtggtcgaaaaaaaattaaaggaattttTCAATGTAACGAATGTGGAAAATGCTTTAAATTTAAGGAAAATCTGAAACAACATGAAAAGTCACATAGTGAGGAGCGACCGTTTCAATGTCAAGAATGCGGGAAAGCATTTAAACTTCGAAGTAATCTTTCTGAACACAAAAGATTACATGCAGGAATTCGAAAATACGAATGTAAAATATGCCAGAAAAAGTTTGTTCTACCCTGGCATCTGAAAAATCACCAGATCacacacacaggagaaaaaaattacatgtgttCAATATGCGGAAAATCATTTACAACCTCTTCGAGTTTAAAAACACACACTCGCATACACACAGGTGAAAGGCCTTATGAATGTGAGATCTGtcacaaaaagtttaaacaagaaataaatttaaaataccacCACAGAAGTCACTCTGGTGAAAAACCATACACTTGCTCATATTGTGGCAAGTCAGTGGCTACTTCATACAGTTTGACCATACATACTCGAATCCATACTGGGGAGTTACCATACAAGTGTCATATTTGTACCAAGGGTTTTACAAATTCGGGATGTCTCAACACTCATATtcgaCTGGCCCATAAAAAGGAGAAAAATTTTGAATGTCATATTTGTCACAACAGATTCAGTAAAAATAGAAGTTTAAAAGATCACCTCATAACGCACACAGATGAAAGGCCTGAGgcTAAATTAAACGATCGTCTTCCATCTCGAATGTGTAATAAATGCGAAGAAGTATTATTAAACTGTTATAACTTCCGTGTTTCTGTATTAATAAACgatattaagttaaaagaacAGCTAGAATCGAAGGAAAACGTAGAAATAGAAACTTCACCTTTAAAACCTGAAGAAAAggatataattaaagaagaaTCTGACGATGAAtttgataatgataataatgataCCAATATGTCAGATGATACACCCATTTCTCAGTTAATTGATCCTGCAAAGTTGGAGGCAAAGTTAGAATGTATTATTGATGAATCATCAAAGAAGGAATATAGTGATTTTGAAGATGAACCTCCTGaggaaatattatttaaatgcgATTTATGTGGAAAGACATTTTcgaaaaaaggttatttaaaaCAACACAAGAAGACACATAACACAGAAAGGCCTTATCAGTGTCAGATTTGTGGAAAAGCATTTAAAATGAGTGGGACACTGTCTGAACACAAAAGGACACATGCAGaagttgCAACTCACGAATGCACAACTTGCCACAAAAAATTCAAACTACCTAGTAAGTTGAAAGTCCACATGCGTACCCACATTGGAGAAAGAAATTTCATTTGTTCCGCTTGTGGAAAGGCATTTACCACATCTACCAACTTGAAGCTGCATTATTTAATCCATACAGGAGAAAGGCCATTTGAATGTGAAATCTGTCACAAAAAGTTCAAACAAGAAATTAACCTGAAATACCATCATAGAAGCCATTCTGGTGAAAAACCCTATGTTTGTTCTTATTGTGGCAAATCTGTCGCGTCTGCAGCTAGCTTAACTATACACATACGTACACATACTGGAGAGTTACCATACCATTGTCATATCTGCACACAAAAATTTATCAACAAGAGCTGTTTGAATTCTCATGTTCGTCTGGTCCACAAGAAAGAAAGGAATTTTGAGTGCCATATATGCCACAACAGATTTAGCAAAAATAGAAGTTTGAAAGATCATCTTATAACTCACACTGATGAGAGGCCTGAAGTCTGTAAAATGTGTGGTAAGACGTTTAGAACTAGAAATGGTTTAAATAAACATACGAAATTACACTTAAAAGACCTAGAAAATATTTGTAGATTATGTTTAAACGAAAATCcagttaaacaattaaaatctaAACATAAGTCATTGAAGGTAGATTTTTATTCTATGTTAAGTGATTGTGCTTCAATcgagGCTACCTTAAACGATGAACTGCCTTCTAAAATGTGTAAGAAATGCGAAAAAGCTTTGGTAAATCATTATAAATTTCGTCAATCGGTAAAAGAAAacgatttaaagttaaaacaaacaATAGAATCAAAGAAAAACATTGTACTgcaagaagaaataaaatatgacaatgaAGAAGTAAAAAACGATGAAGATAAAGTTGAAATTAAGCAGGAAAAGGATGAAAAGGAAAATGATAAGGACGAGGGAGAAGAAGATGAGGATTATGAGGATGATGCCAAAGATGATTTTGATTACTCAGATAATGAACTACAAGAACCTAAGCCAAATTCAGTGGAAATAGTTAAAGTAGAGTGTAACAACAGTATTGTCGAAACTACAGTAGTGTACACCAAAGGTGGCAGGAGAAAACTTAAAGGCATATTTCAATGTGACATTTGTGGAAAATgctttgattttaaaaacaatttacgTATACACAAACAGTCTCACAGTACTGAAAGGCCTTACAAATGCACACAGTGTGACAAGGCATTTAAAACAAGTTGTGATTTGTCtgagcataaaaaatatcactcaggagAAAGAAAGTTTGAATGCAACATATGTCAGAAGAAATTTATAGTAAGCCGTCATTTACGAAAACATATGCGCACACATACAGGTGAACGACCCTACATGTGTTCATACTGTGGCAAATCATTTGCCACTTCATCCACCTTATCTGTACACACACGAATCCATACCGGGGTCATGCCATACGAGTGTGATATCTGTCACAGAAGATTCACCCAAGAATCAGGTGTGCAGCGTCACAAGAGAACTCATACTGGCGAGAAATTATTTACCTGCTCAATGTGCGGAAAGTCGGTCGGAACTGCGCATAGGTTGACTATTCATATTCGTCGGCATACTGGCGAAATGCCCTTCAACTGTCACATTTGCAACAAGCCGTTTACTAATAAGGGAGACATGAAGAGCCATATAAAGCTGGCGCATAACAAGGAAAAGAATTACGAGTGTCACATTTGCAGCAATACATACAGTAAAAGTCAGCACTTAAAAGATCATTTAATTTCACATACTGATGAACGCCCTGAAGTGTGCAAATTGTGCGGCAAGACTTTCCGAACCAAGAGTGTTTTGAATAAACATACAAAATCACATTTAAAACATTTGAATTTAAGTGTCTAA
Protein Sequence
MEALDFENICRICLDKGPNKELSLKHKKLDVDYYFLLNVCTSIKAETNDSLPSKMCKKCEKTLINYYKFRNSAIENDTKLKEVIESKKNIVFLKEPEKNKENYEVKEEKHENIKDHEDSEDNHDDGVESDSNDADESQPVVSMSEIVKVELSTGNTTITTKGGRKKIKGIFQCNECGKCFKFKENLKQHEKSHSEERPFQCQECGKAFKLRSNLSEHKRLHAGIRKYECKICQKKFVLPWHLKNHQITHTGEKNYMCSICGKSFTTSSSLKTHTRIHTGERPYECEICHKKFKQEINLKYHHRSHSGEKPYTCSYCGKSVATSYSLTIHTRIHTGELPYKCHICTKGFTNSGCLNTHIRLAHKKEKNFECHICHNRFSKNRSLKDHLITHTDERPEAKLNDRLPSRMCNKCEEVLLNCYNFRVSVLINDIKLKEQLESKENVEIETSPLKPEEKDIIKEESDDEFDNDNNDTNMSDDTPISQLIDPAKLEAKLECIIDESSKKEYSDFEDEPPEEILFKCDLCGKTFSKKGYLKQHKKTHNTERPYQCQICGKAFKMSGTLSEHKRTHAEVATHECTTCHKKFKLPSKLKVHMRTHIGERNFICSACGKAFTTSTNLKLHYLIHTGERPFECEICHKKFKQEINLKYHHRSHSGEKPYVCSYCGKSVASAASLTIHIRTHTGELPYHCHICTQKFINKSCLNSHVRLVHKKERNFECHICHNRFSKNRSLKDHLITHTDERPEVCKMCGKTFRTRNGLNKHTKLHLKDLENICRLCLNENPVKQLKSKHKSLKVDFYSMLSDCASIEATLNDELPSKMCKKCEKALVNHYKFRQSVKENDLKLKQTIESKKNIVLQEEIKYDNEEVKNDEDKVEIKQEKDEKENDKDEGEEDEDYEDDAKDDFDYSDNELQEPKPNSVEIVKVECNNSIVETTVVYTKGGRRKLKGIFQCDICGKCFDFKNNLRIHKQSHSTERPYKCTQCDKAFKTSCDLSEHKKYHSGERKFECNICQKKFIVSRHLRKHMRTHTGERPYMCSYCGKSFATSSTLSVHTRIHTGVMPYECDICHRRFTQESGVQRHKRTHTGEKLFTCSMCGKSVGTAHRLTIHIRRHTGEMPFNCHICNKPFTNKGDMKSHIKLAHNKEKNYECHICSNTYSKSQHLKDHLISHTDERPEVCKLCGKTFRTKSVLNKHTKSHLKHLNLSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-