Bgla030283.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294053.1:26306917-26317931[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 1.3e-05 0.00076 20.7 2.8 1 23 10 32 10 32 0.97
2 28 0.016 0.93 11.0 0.6 1 23 38 60 38 60 0.97
3 28 1.7e-06 9.8e-05 23.5 2.9 1 23 66 88 66 88 0.98
4 28 2.7e-05 0.0015 19.8 1.2 1 23 94 116 94 116 0.99
5 28 8.3e-07 4.7e-05 24.5 0.4 1 23 122 144 122 144 0.98
6 28 5.2e-06 0.00029 22.0 1.2 1 23 150 172 150 172 0.98
7 28 0.00043 0.024 16.0 6.6 1 23 186 208 186 208 0.97
8 28 6.6e-05 0.0038 18.5 0.8 1 23 214 236 214 236 0.97
9 28 9.2e-05 0.0052 18.1 1.8 1 23 242 264 242 264 0.99
10 28 2.2e-06 0.00013 23.2 0.3 1 23 270 292 270 292 0.97
11 28 2.4e-05 0.0014 19.9 1.4 2 23 299 320 298 320 0.98
12 28 2.8e-06 0.00016 22.8 0.3 1 23 326 348 326 348 0.98
13 28 0.0012 0.067 14.6 2.4 1 23 354 376 354 376 0.98
14 28 9.5e-06 0.00054 21.2 6.0 1 23 520 542 520 542 0.99
15 28 0.00019 0.011 17.1 1.2 1 23 548 570 548 570 0.99
16 28 3.8e-05 0.0021 19.3 4.6 1 23 651 673 651 673 0.97
17 28 9.3e-06 0.00053 21.2 4.8 1 23 679 701 679 701 0.98
18 28 4.4e-06 0.00025 22.2 0.7 1 23 707 729 707 729 0.98
19 28 0.00019 0.011 17.1 1.1 1 23 735 757 735 757 0.98
20 28 0.0013 0.075 14.4 4.2 1 23 763 785 763 785 0.98
21 28 0.0024 0.14 13.6 2.5 1 23 791 813 791 813 0.99
22 28 2.4e-05 0.0013 19.9 0.2 1 23 819 841 819 841 0.98
23 28 0.0033 0.19 13.2 0.3 3 20 849 866 848 867 0.95
24 28 1.8e-05 0.001 20.3 3.8 1 23 1002 1024 1002 1024 0.97
25 28 1.4e-06 7.7e-05 23.8 3.5 1 23 1030 1052 1030 1052 0.99
26 28 8.8e-06 0.0005 21.3 3.1 1 23 1058 1080 1058 1080 0.98
27 28 3.5e-05 0.002 19.4 0.9 1 23 1086 1108 1086 1108 0.98
28 28 6e-05 0.0034 18.7 1.6 1 23 1114 1136 1114 1136 0.98

Sequence Information

Coding Sequence
ATGCTAATACACTCCAGCGAAAAGAAACATTCATGCGCTTATTGCGGAAAATCATTCTTCAAAAAATCAACCTTGCTAATCCACATCAGAAGTCACACTGGCGAAAAACCCTACGAATGTGACATATGTCAAAGGAAATTCGTTCAACTAGCAGGCCTGAGTTTTCACAAACGATCGCATTCTGGAGAAAGACCATACAAATGTGACATTTGCAACAAATCCTTTGCAACCAGTAGCTACTTAAAGACGCATCATCTCATTCACAAAGGAGAACTTCCTTTTAAATGCACGGTTTGTTCAAAAGGGTTGAGGGCAAGAAGCGCTCTAAAAAAACACATGCGCACACATACCGGAGAAAGAAATTACAGTTGCAAATTATGTGGAAAAGCTTTTGTAAATTCTTCCACGGTGAAAATTCACATGAGGATACATAGGGGAGATTTTCCTTTCAAATGTGAGCTTTGTCCAAAAGCTTTTAGGCAAAAAGTACATCTGGAAGGTCATATCAGACAGCATAATGGACAGCCGTCTGTAGTTATACCAGAAGAAAAAACGCACGAATGCAAAATATGCCACAAAAAATTTGCAAGAAAAAGTTACTTAACCGGCCATCTCCACATACACTCCGGCATCCATCCTCACGTTTGTACTTATTGCGGAAAAGCATTCTTGAAAAACTCTTCGCTGTTAATACACATCAGAATTCATACAGGAGAAAAGCCGTACGAATGTGAAGTTTGCCATAGAAAATTCGTACAGGATGCAAGCCTTAAAATTCACAAAAGAACCCATACCGGAGAAAGACCATACACTTGTGAAGTTTGTGGCAAATCTTTTGCAGACGCAACGTACCTGAAGAGGCACAACATGATCCATCGTGGCGAGTTTCCtgttaaatgtcaaatttgctCAAAAGGTTTCAGAGAAAGGAGTGCCATGACGAAACACATGAGAAGACATACTGGCGAGAGAAACTACTTTTGTGATATTTGCGGAAAGGCATTTGCTAACTCGTATTACATCAAGATACATATGAGGATACACAGAGGGGAGTATCCTTTCAAGTGCGAACTATGCCCGAAAGAATGCCGGATGAAAGTCGATCTTGATAAGCACATGAAGCAGCATACTGATCCTCCggttaaaaatgatattcctGAACCTCCCGTTAATTGTACGGCTAACACGAACGATAGTTTACCAACTAAGCTGtgcaaaaaatgtgaaaatctGCTAGTAAAAAACTACAAATTCCGAAATTCGGTAATAGAGATagataataagttaaaaaaaatattagcggTAAAAAAGAATACTCCAAATGAAGTTACAGAAACACAAACAGAAGAAACTGGTCAAATCAAAGAAGAAACTGATGgatataatttttcatatgaatATATCAGTAATAATGATGATAAAACTTTAGAACCTGAAAATGATAATATATCAAATCACGATGATCTTCTTAAAGAAGAATGTTCGTCAGATGATGAACCCTTATTAAAAAAGGTGAACAAAAGAAGACCTTACAGAAAAAAACCGCAACCTGAGTCATATCAATGTGATCTATGTGGGAAATCATTTAAAAAGAAATGTAATCTCCGCCAACATAAACAAACACATAACACAGAAAGGCCTTATCAGTGTCAAATTTGTGGAAGAAGGTTTAAAATGATTGGGACTCTTTCTGAACATAGAAAAAGGCATTCAGAGACAGAGACAAAAACAGAAGAAAACGATGAAATTAAGGAAGAAAGTAATGATGgtgataattttttaactgaTGACATTGATAACTTTGATGATAAAACTTCAAAACctgaaaatgataataaagatGCAATTAATCCTGTCGATCTCGTAAAAATAGAATGCACTAACTCTGATGATGAACCactgttaaaaaaagttaagagaACATACAAGAAAAAACCGCAGCCCGAATCTTTTCAATGTGATCAATGTGGGAAATCATTTAAAACGAAACGTCACATAAAAAAACATGAACTATCACATAACACAGAAAGACCCTTTCAGTGCCAAATTTGTGGAAAATCTTTTAAGAAGAAATGTGACTTGAAACAACATGAGCAAACTCACAATACAGAAAGGCCTTTTCAATGTCAAATTTGTGGAAAAGCATTTAAGGCAAAAGAAAATCTGGCCAaacacaaaaaattacattcaGGCGAGAAGAAGCACGAATGTAGCATTTGCCAGAAacgatttattattttagggaAATTAAAGGATCACATGCGCATTCACACTGGCGAGCGCAATTACGTCTGTTCCCATTGCGGTAAAGCGTTTTTACAGCACCACAGTTTGATCATACACACACGGATACATACAGGAGAAAAGCCGTACGAATGTGACATTTGCCACCAAAGGTTTCGCGAATTAACGACCATAGCCAGGCATAAAAGGACGCACACCGGTGAAAGGCCGTTCGTTTGTGACAAGTGCGGAAAAGCTTTTGCAGGCAAGACGGCCTTGACTTTACACAAACGCATACACACTGAAAACTACCCCAACATGTGCCAAATTTGTACGCAAATTTTCAAGAATCCTGAGAGTTTGAGTCGACATATTCACCCGGGCTCTGCCCATATTCACCGTAATATCAGGCGGAAAAAATCCGCTCAAAACCAGTATAGACCCCCAGTAGGCCATCCATTTGATTTAAACGATGAAGAGTATGTTatagagtgcgaagcattttaTATATTCAGGGCTTGTTTATTTGCGAGAACAGAGGCAAAAACAGAAGAAAATGATGAAATTAAGGAAGAAAGTAATGACAACGACAATTTCATCACTGATGATCTGGATAACTTTGATGATGAAACTGTAAAACCTGAAAACAATACCTTTAAAGACACAGTGAACTCATGTAACCTTGTAAAAGAAGAATGCAACGTTTCTGATGATGATAAACCTTTATTAAAAAAGGTTACAAAACGAAAACCATACAAGAAAAAACCGCAGCCCGAGTCATTTCAGTGCGATCAATGTGGAAAGTCGTTTAAAATGAAACGCCACCTAAAACAACATGCACTATCACATAGTACAGAAAGGCCCTTCCAATGCCCAATTTGTGGAAAATCCTTTAAAAAGAAATGTGACCTGAGACAGCATGAACAAACTCATAACACAGAAAGGCCGTTTCAATGCCAAGTTTGTGGAAAACGATTTAAAATGAATGAGAATCTGTCTAAACACAAAAAAAGACATTCAGGTGAGAAAAAGCACGAATGTAACGTGTGCCAGAAGAGATTTATCATTTTAGGGAATTTAAAGGAGCACATGCGTATACACGGTAATGAACGCAATTATGTTTGTTCATATTGCGGTAAATCATTCTTACAACACAACAATTTGATCATACACACTCGGATTCACACAGGAGAAAAGCCTTACGAATGTGAAGTTTGCCACAGAAGGTAA
Protein Sequence
MLIHSSEKKHSCAYCGKSFFKKSTLLIHIRSHTGEKPYECDICQRKFVQLAGLSFHKRSHSGERPYKCDICNKSFATSSYLKTHHLIHKGELPFKCTVCSKGLRARSALKKHMRTHTGERNYSCKLCGKAFVNSSTVKIHMRIHRGDFPFKCELCPKAFRQKVHLEGHIRQHNGQPSVVIPEEKTHECKICHKKFARKSYLTGHLHIHSGIHPHVCTYCGKAFLKNSSLLIHIRIHTGEKPYECEVCHRKFVQDASLKIHKRTHTGERPYTCEVCGKSFADATYLKRHNMIHRGEFPVKCQICSKGFRERSAMTKHMRRHTGERNYFCDICGKAFANSYYIKIHMRIHRGEYPFKCELCPKECRMKVDLDKHMKQHTDPPVKNDIPEPPVNCTANTNDSLPTKLCKKCENLLVKNYKFRNSVIEIDNKLKKILAVKKNTPNEVTETQTEETGQIKEETDGYNFSYEYISNNDDKTLEPENDNISNHDDLLKEECSSDDEPLLKKVNKRRPYRKKPQPESYQCDLCGKSFKKKCNLRQHKQTHNTERPYQCQICGRRFKMIGTLSEHRKRHSETETKTEENDEIKEESNDGDNFLTDDIDNFDDKTSKPENDNKDAINPVDLVKIECTNSDDEPLLKKVKRTYKKKPQPESFQCDQCGKSFKTKRHIKKHELSHNTERPFQCQICGKSFKKKCDLKQHEQTHNTERPFQCQICGKAFKAKENLAKHKKLHSGEKKHECSICQKRFIILGKLKDHMRIHTGERNYVCSHCGKAFLQHHSLIIHTRIHTGEKPYECDICHQRFRELTTIARHKRTHTGERPFVCDKCGKAFAGKTALTLHKRIHTENYPNMCQICTQIFKNPESLSRHIHPGSAHIHRNIRRKKSAQNQYRPPVGHPFDLNDEEYVIECEAFYIFRACLFARTEAKTEENDEIKEESNDNDNFITDDLDNFDDETVKPENNTFKDTVNSCNLVKEECNVSDDDKPLLKKVTKRKPYKKKPQPESFQCDQCGKSFKMKRHLKQHALSHSTERPFQCPICGKSFKKKCDLRQHEQTHNTERPFQCQVCGKRFKMNENLSKHKKRHSGEKKHECNVCQKRFIILGNLKEHMRIHGNERNYVCSYCGKSFLQHNNLIIHTRIHTGEKPYECEVCHRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-