Bgla022478.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachypterus glaber
Gene Symbol
-
Assembly
GCA_958510825.1
Location
OY294050.1:8151540-8161414[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 2.8e-06 0.00016 22.9 3.4 1 23 68 90 68 90 0.97
2 30 4.8e-07 2.7e-05 25.3 0.7 1 23 96 118 96 118 0.99
3 30 0.00023 0.013 16.8 0.2 1 23 124 146 124 146 0.97
4 30 3.4e-05 0.002 19.4 0.4 1 23 152 174 152 174 0.99
5 30 2.5e-05 0.0014 19.9 3.2 1 23 180 202 180 202 0.97
6 30 0.00011 0.0063 17.8 0.8 1 23 208 231 208 231 0.96
7 30 0.72 41 5.8 2.5 1 13 237 249 237 258 0.89
8 30 1.8e-06 0.00011 23.4 1.8 1 23 264 286 264 286 0.94
9 30 9.8e-06 0.00056 21.1 2.7 1 23 292 314 292 314 0.97
10 30 0.00044 0.025 16.0 1.1 1 23 320 342 320 342 0.99
11 30 6.5e-06 0.00037 21.7 0.1 1 23 350 372 350 372 0.98
12 30 0.92 52 5.5 0.0 1 11 378 388 378 395 0.80
13 30 0.00025 0.014 16.7 4.8 1 23 408 430 408 430 0.98
14 30 1.6e-06 9e-05 23.6 2.7 1 23 506 528 506 528 0.97
15 30 5.4e-07 3.1e-05 25.1 0.7 1 23 534 556 534 556 0.99
16 30 0.00023 0.013 16.8 0.2 1 23 562 584 562 584 0.97
17 30 1.5e-05 0.00085 20.6 0.7 1 23 590 612 590 612 0.99
18 30 1.3e-05 0.00075 20.7 3.9 1 23 618 640 618 640 0.97
19 30 5.1e-05 0.0029 18.9 0.3 1 23 646 669 646 669 0.96
20 30 0.0098 0.56 11.7 0.4 1 13 675 687 675 696 0.86
21 30 8.8e-06 0.0005 21.3 0.6 1 23 702 724 702 724 0.95
22 30 0.00011 0.0061 17.9 5.7 1 23 730 752 730 752 0.96
23 30 0.015 0.83 11.2 1.5 1 23 758 780 758 780 0.99
24 30 3.7e-06 0.00021 22.5 0.1 1 23 788 810 788 810 0.98
25 30 0.0014 0.082 14.3 0.4 1 23 816 839 816 839 0.92
26 30 0.039 2.2 9.8 1.2 1 20 846 865 846 868 0.91
27 30 1.3e-05 0.00075 20.7 4.7 1 23 874 896 874 896 0.98
28 30 3.4e-07 1.9e-05 25.8 0.8 1 23 902 924 902 924 0.98
29 30 5.3e-05 0.003 18.8 2.5 1 23 930 952 930 952 0.98
30 30 0.015 0.85 11.1 2.0 1 21 957 977 957 978 0.95

Sequence Information

Coding Sequence
ATGGCTGATGAAAAGGTAAAAATTATGACAGAAGACTTCATCAAACCAAGCGAAGAGCAAATGATTGGAAAGAAATTTGAAAACGAAACTGTTTATGACGAAACTATTGAAGAAGAAAGAAAGTTAATAGTAAAATTGACGAGATTTGATTTCGAGTCAATAATCAATCCCATTGATAAGAAAATTAGCAGAGAGAGGAATTTCGATTGCAAATACTGCCAGAAAACATTTCCGCAAAAATATTTGCTGAGAAAACATGTACGCAAACACGACAAAAATAAACCGTACGAGTGTACATATTGCGGAAAAGTATTtgctagtaatttttttttgacaaatcaCATTCGCATCCACACTGGCGAAAAACCTTTCAAATGTCAATTATGCGACAAAGGTTTTGCTCAATTAGGTGATATGAAAAAGCATGCTATAATCCACACCGGTGTTAGAGCCTTCACTTGTGCTGAATGTGGAAAGTCTTTCGCTTGGAAACGGTCTTTATTATCACATATACGAACGCACATGAAGCACAAACCATATGCGTGCACGATGTGCACGAAAACATTTTGCGATAATTCCCAACTAAAACTTCATATTTATATGCACAGCGGAGAAAAACCTTTCCAATGTAAAATTTGCCAGAAATCTTTCGCACAAAAACGTATTTTACAATCCCATTTAAGAGGAGTACACAGTGGCATCAAGCCATACTCTTGCAactattgtaaaaaaatgtttccttacCCTGTTAAAAAATGCCATATCAGGATGCACACAGGTGAAAAGCCATACAAATGCAACATTTGCGACAAACGTTTTAGTTCAAATGAACATCTTAAAAATCATGTAGTCGCACACATTGGGGAAAAAAAGCACCCATGCTCGTTTTGCGACAAATCCTTCGTACACAAAGAAAGTCTCCGTGTTCACATCCGTGCACACAAAGGCGAGAGAAATTTTAAGTGCGTGCAGTGTGAAAAAACTTTTCTTACTTCGGGCGCTATGAAACGGCACATGCTGACCCACACCCTTACgagagaaaaaaattatgccTGTTCACTCTGCGAAAAAAGATTCGTAACTAATAGTGCTCTAGCGATACACATTCGAAGTCATACCGGTGAGAAGCCATTTATTTGTTTGCTTTGCGGCAAAACTTTTGCAGCAGGGTCCTATTTAAGAATTGATATGGGCTATCTACATAGTGACAAGAAATCATTTCATACGTGTTCCTATTGCAAGAAAAATTTATCAAGCGCAAGCGCCTTAAAGCATCACATGCTCAGGCATGGGGAgAATAATTACTTGAAAAATATGGCTGATGAGAAGGTAAACATTAAGACAGAAGACTTCATCAAACCAAGCGAAGAGCAAATGATTGGAAAGAAATTAGAAAACGAAACTGTTTATGACGAAACTATTGAAGAAGAAAGAAAGttaatagtaaaattgacaAGATTTGATTTCGAGTCAATAATCAATCCCATTGATAAGAAAATTAGCAGAGAAAAGAATTTCGATTGCAAATACTGTCAGAAAACATTTCCGCAAAAAGATTTGCTGAGAAAACATGTACGCAAACACGACAAAAATAAACCGTACGAGTGTTCATATTGCGGAAAAGTATTtgctagtaatttttttttgacaaatcaCATTCGCATCCACACTGGCGAAAAACCTTTCAAATGTCAATTATGCGACAAAGGTTTTGCTCAATTAGGTGATATGAAAAAGCATGCTATAATCCACACCGGTGTTAGAGCCTTCACTTGTGCTGAATGTGGAAAGTCTTTCTCTTGGAAACGGTCTTTATTATCACATATTCGAACGCACATGAAGCACAAACCATATGCGTGCACGATGTGCCCGAAAACATTTTGCGATAATTCCCAACTAAAACTTCATATTCATATGCACAGCGGGGAaaaaccttttcaatgtaaaattTGCCAGAAAACTTTCGCACAAAAAGGTATTTTACAAGCTCATTTAAGAGGAGTGCACAGTGGCATCAAGCCATACTCGTGCAACTATTGCAACAAAATGTTTTCTCGCCCTGTTAAAATAGGCCATATCAGGATGCACACAGGTGAAAAGCCATTCAAATGCGACATCTGCGACTTTCGTTTTAGTACAAATGATAATCTAAAAAGTCATGCAGTCGTACACACTGGGGAAAAAAATCACCATTGCTCGTATTGCGACAAATCCTTCGTACACAGAGAAAGTCTCCTTACCCACATCCGCGCACACAAAGGCGAGAGAAATTTTAAGTGCGTGCAGTGTGAAAACACTTTTCTTACTTCAGGCACTATGAAACGGCACATGCTGACCCACAACCATACGAGAGAAAAAAATTACGCCTGCTCACTCTGCGAAAAAACATTCGTAAATAATAGTGCTCTAGCCATACACATTCGAAGTCATACCGGTGAGAAACCATTTATTTGTTTGCTTTGCGGCAAAACTTTCGCAGCAAGGATGTATTTAAGAAATCATATGGACTTTCTACATAGGGATAAGAAAAAATCTCATATGTGTAcctattgcaaaaaatatttaccgaGCGCAAACGATTTGAAGGAACACATGCCCAGGCATAGAGAGGTAAAACGACACAAATGCACCCAGTGTGAGAAATGTTTCTTTCAACCTGGAGATTTGAGAAGACATATGGCTACACACAGCGAAGAGAAGTCTTTTGTTTGCCCAGAGTGCAACAGGGGCTTTAATATCAAAACTAATTTGACTAGACACATGCGTACACATTCTGGGCAAAAACCTCATAAGTGTTTGACTTGCCATAGACCTTTCGCACAGGCGCCAGATTTAAGAAAACACATGCTTACTCATGAacgaaaatcatttttttgttcaaaatgtgGAAAACAATTCCACTTAAAGAGACCCCTAATAAAACACATACGCTATAATAAGTGTTCCATGTCACAGAGTGGCCACTTATGA
Protein Sequence
MADEKVKIMTEDFIKPSEEQMIGKKFENETVYDETIEEERKLIVKLTRFDFESIINPIDKKISRERNFDCKYCQKTFPQKYLLRKHVRKHDKNKPYECTYCGKVFASNFFLTNHIRIHTGEKPFKCQLCDKGFAQLGDMKKHAIIHTGVRAFTCAECGKSFAWKRSLLSHIRTHMKHKPYACTMCTKTFCDNSQLKLHIYMHSGEKPFQCKICQKSFAQKRILQSHLRGVHSGIKPYSCNYCKKMFPYPVKKCHIRMHTGEKPYKCNICDKRFSSNEHLKNHVVAHIGEKKHPCSFCDKSFVHKESLRVHIRAHKGERNFKCVQCEKTFLTSGAMKRHMLTHTLTREKNYACSLCEKRFVTNSALAIHIRSHTGEKPFICLLCGKTFAAGSYLRIDMGYLHSDKKSFHTCSYCKKNLSSASALKHHMLRHGENNYLKNMADEKVNIKTEDFIKPSEEQMIGKKLENETVYDETIEEERKLIVKLTRFDFESIINPIDKKISREKNFDCKYCQKTFPQKDLLRKHVRKHDKNKPYECSYCGKVFASNFFLTNHIRIHTGEKPFKCQLCDKGFAQLGDMKKHAIIHTGVRAFTCAECGKSFSWKRSLLSHIRTHMKHKPYACTMCPKTFCDNSQLKLHIHMHSGEKPFQCKICQKTFAQKGILQAHLRGVHSGIKPYSCNYCNKMFSRPVKIGHIRMHTGEKPFKCDICDFRFSTNDNLKSHAVVHTGEKNHHCSYCDKSFVHRESLLTHIRAHKGERNFKCVQCENTFLTSGTMKRHMLTHNHTREKNYACSLCEKTFVNNSALAIHIRSHTGEKPFICLLCGKTFAARMYLRNHMDFLHRDKKKSHMCTYCKKYLPSANDLKEHMPRHREVKRHKCTQCEKCFFQPGDLRRHMATHSEEKSFVCPECNRGFNIKTNLTRHMRTHSGQKPHKCLTCHRPFAQAPDLRKHMLTHERKSFFCSKCGKQFHLKRPLIKHIRYNKCSMSQSGHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-