Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.042 44 5.1 1.7 17 40 109 129 102 132 0.79

2 9 0.0023 2.4 9.2 3.2 9 41 126 155 124 157 0.89

3 9 0.31 3.2e+02 2.4 4.4 3 40 149 182 147 185 0.74

4 9 0.011 11 7.1 4.3 17 41 190 211 179 213 0.83

5 9 0.00057 0.58 11.1 2.1 18 39 219 237 214 241 0.89

6 9 0.032 33 5.5 2.2 17 28 246 257 238 268 0.80

7 9 0.0083 8.5 7.4 2.1 5 39 263 293 260 297 0.76

8 9 0.065 66 4.6 3.6 18 39 303 321 291 325 0.80

9 9 0.012 12 6.9 3.5 13 39 326 349 317 353 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.042	44	5.1	1.7	17	40	109	129	102	132	0.79
2	9	0.0023	2.4	9.2	3.2	9	41	126	155	124	157	0.89
3	9	0.31	3.2e+02	2.4	4.4	3	40	149	182	147	185	0.74
4	9	0.011	11	7.1	4.3	17	41	190	211	179	213	0.83
5	9	0.00057	0.58	11.1	2.1	18	39	219	237	214	241	0.89
6	9	0.032	33	5.5	2.2	17	28	246	257	238	268	0.80
7	9	0.0083	8.5	7.4	2.1	5	39	263	293	260	297	0.76
8	9	0.065	66	4.6	3.6	18	39	303	321	291	325	0.80
9	9	0.012	12	6.9	3.5	13	39	326	349	317	353	0.83

Coding Sequence: atggatactgttaatataaaaatagaggAAGACATTGAAATTCATGAGGATCCGTTGGAAATCAAGCAAGAACCCATagataaagattttaaaatgaaaattgaagaaacgagtgataataaaaattcagcTGATgctaattttaacgaaaatgaGATATTTCCAaaagaagaattttttatcCTGGATGAAgaacatattaaaaaagaaattgctAATCAAGAGAAGAGTAATAATGAATTAAACATCAAAATGGAAAAAGATGAACAAGATGTAGAAGAATATGTGGAGGAAAATTTAGGACAAGCATGtggtaaaaatttgttttattgccCATACTGTAAGAAGAGTTTCTCGCAAAAGAATGATTTAGAAAAGCATATTCGAACACACAAGACCCATGAATGCCCGCATTGTGAAAAAGCGTTTTTACGAGCATCAGATTTAAAACGacatattcgcacgcatactGGGGAAAAACCCTATAAATGCACGCAATGTGAGAAAACATATTCAGAGAtaggatatttaaataaacatattcgCACTTGTACTGGGGAGAGACCCTATAAATGCAAGCACTGTGAGAAAGACTTTACTAATTCATCATATTTGAAAGTGCATATTCGCACACATACTGGGGAAAGACCCTATAAATGCATGCACTGTGAGAAAAACTTTGTACATTCATCAGATTTAAGACGTCATATTCTTACACATACTGGAGATAAACCCTATAAATGCACGCACTGTGAGAAAACCTTTTCACAGAtaggatatttaaataaacatatgCGCATCCATACTGGGGAGAGGTCATTTAAATGCACGCACTGTGGAAAAACGTTTCCAGAGTTAAGAGGCTTAAATAGACATATTAGCACGCATACTGGGGAGAGACCCTATAAATGCATGCACTGTGAGAAAGACTTTGGTCattcacaaaatttaaaaatacatattctcACGCATACTGGGGAAAAATCCTATAAATGCACGTACTGTGAAAAATCCTTCTTTGCTTCTTCACATTTAAGAAGACATATTCTCACACATACTGTTGAGAAACCCTAA
Protein Sequence: MDTVNIKIEEDIEIHEDPLEIKQEPIDKDFKMKIEETSDNKNSADANFNENEIFPKEEFFILDEEHIKKEIANQEKSNNELNIKMEKDEQDVEEYVEENLGQACGKNLFYCPYCKKSFSQKNDLEKHIRTHKTHECPHCEKAFLRASDLKRHIRTHTGEKPYKCTQCEKTYSEIGYLNKHIRTCTGERPYKCKHCEKDFTNSSYLKVHIRTHTGERPYKCMHCEKNFVHSSDLRRHILTHTGDKPYKCTHCEKTFSQIGYLNKHMRIHTGERSFKCTHCGKTFPELRGLNRHISTHTGERPYKCMHCEKDFGHSQNLKIHILTHTGEKSYKCTYCEKSFFASSHLRRHILTHTVEKP

Sequence clustering based on sequence similarity using MMseqs2