Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0006 0.62 11.1 0.7 18 40 85 104 77 107 0.88

2 9 0.0059 6.1 7.9 0.4 19 40 114 132 110 135 0.90

3 9 0.0041 4.3 8.4 1.1 17 38 140 158 133 162 0.89

4 9 0.0025 2.5 9.1 0.5 14 41 165 189 159 195 0.85

5 9 0.27 2.8e+02 2.6 3.6 4 41 184 224 183 227 0.82

6 9 0.095 97 4.0 4.2 7 40 215 244 209 253 0.76

7 9 0.82 8.5e+02 1.0 1.8 19 39 254 271 241 280 0.79

8 9 0.035 35 5.4 2.8 2 41 266 301 265 303 0.87

9 9 0.02 21 6.2 0.1 18 39 309 327 306 332 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0006	0.62	11.1	0.7	18	40	85	104	77	107	0.88
2	9	0.0059	6.1	7.9	0.4	19	40	114	132	110	135	0.90
3	9	0.0041	4.3	8.4	1.1	17	38	140	158	133	162	0.89
4	9	0.0025	2.5	9.1	0.5	14	41	165	189	159	195	0.85
5	9	0.27	2.8e+02	2.6	3.6	4	41	184	224	183	227	0.82
6	9	0.095	97	4.0	4.2	7	40	215	244	209	253	0.76
7	9	0.82	8.5e+02	1.0	1.8	19	39	254	271	241	280	0.79
8	9	0.035	35	5.4	2.8	2	41	266	301	265	303	0.87
9	9	0.02	21	6.2	0.1	18	39	309	327	306	332	0.83

Coding Sequence: atggAAGATATAAAGGAAGATATAAAAGTTAAGATAGAACAAACAGATTTTGAAGAAAATGATCATCAAATAAACATGTCCATAAAACAAGAACATAATGCTCAAAATGAAGAGCATATAGAAGTGGAGATTGCAGAATACCAAGTATGTATCGAAGACATCAAAAATATGACGCAAGAAATAAAACCAGAAGAAAATGAAGAACAGTTTGATAATAATGGAAGTACGGAATCTGATAACAAACTTTCGCACTCGTGCGTATATTGCGAAAAATCTTTTTCAACGTCTTCGGATTTAAAAAGACATATGCGCGTTCACACGGGCATTAAACCATTTTCTTGCGAAATGTGCGAAAAATCTTTTTCGCAAACTGAATCTTTAAAAAGACATATTCGCATGCATACGggagaaaaaccatataaatgcGCACATTGCGAGAAAAGTTTCGCACAAATATCGAATTTAAGAGAACACGAGCGTTTTCACATAAGAGAAAAACCTTATTCCTGTTTATATTGCGACGAAAAATTCGCAAACAACACTGGTCTGAAGAAACACGTCCGCACTCATTCCGAAGACGCACACTATACGTGTAAACAGTGCGCAGAACCATTTTCAGAACTATCAACATTCAAACAACACATTCTAACACATAGAGGTGAAAAACGTCATCAGTGCGTAAACTGTGAGAAAAGTTACTCGAATTCCTACGATTTAAGGCAACACCTACACACGCACACTGGTGAAAAACCGCACCTGTGCGCAACGTGCGGAAAATCTTTTGCGACGGGGTCAAGTTTAAAACAGCACGTTTTGACCCACACGGGAGAAAAGGCGCATGCGTGCATACAGTGCGAGAAACGTTTTCGGCACGGTTCAGATTTGAAAAGACATATTCAAACTCATACTGGATATAAACCACACGTTTGTGAATATTGTCAGAAAGCATTTATAGCAGCTTCAGGTTTGACTAGGCATGTTTTCCTTGTTCATTCTAAGaagttaaaaaattga
Protein Sequence: MEDIKEDIKVKIEQTDFEENDHQINMSIKQEHNAQNEEHIEVEIAEYQVCIEDIKNMTQEIKPEENEEQFDNNGSTESDNKLSHSCVYCEKSFSTSSDLKRHMRVHTGIKPFSCEMCEKSFSQTESLKRHIRMHTGEKPYKCAHCEKSFAQISNLREHERFHIREKPYSCLYCDEKFANNTGLKKHVRTHSEDAHYTCKQCAEPFSELSTFKQHILTHRGEKRHQCVNCEKSYSNSYDLRQHLHTHTGEKPHLCATCGKSFATGSSLKQHVLTHTGEKAHACIQCEKRFRHGSDLKRHIQTHTGYKPHVCEYCQKAFIAASGLTRHVFLVHSKKLKN

Sequence clustering based on sequence similarity using MMseqs2