Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0017 1.7 9.6 2.3 14 35 113 131 105 142 0.76

2 6 0.013 13 6.8 2.6 17 31 144 158 131 166 0.72

3 6 0.0054 5.5 8.0 2.7 6 38 162 190 160 195 0.78

4 6 0.0064 6.6 7.8 2.7 18 30 201 214 190 227 0.78

5 6 0.046 47 5.0 0.1 17 41 228 249 218 251 0.85

6 6 0.003 3 8.8 2.0 19 38 258 274 254 279 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0017	1.7	9.6	2.3	14	35	113	131	105	142	0.76
2	6	0.013	13	6.8	2.6	17	31	144	158	131	166	0.72
3	6	0.0054	5.5	8.0	2.7	6	38	162	190	160	195	0.78
4	6	0.0064	6.6	7.8	2.7	18	30	201	214	190	227	0.78
5	6	0.046	47	5.0	0.1	17	41	228	249	218	251	0.85
6	6	0.003	3	8.8	2.0	19	38	258	274	254	279	0.88

Coding Sequence: atggatttatttttcgttaaaatagaAAAGGAGGAGGATACAATCGAACATAAAGTAAAAGAAGAACTTATGGATAGTTCCATTTACATCAAGTCTTTAAAAGAAGAGGATTTTACTCAATTTGTTAAAAGTGAGTTTGTGGACAAAGACGAGCTCAAAAATGTTCTTAATAATCAGGCATTCCATGAAAGTGAAGCAAATAAAGTCGAGATAAAACCTGTAGAAAACTTTAAAGAGGAAGAGAAAATTGGTAGTATCGAAACAAACGCATATGgtgaattttctaattttaatgaTGAGTTTAACCAAAACTGTCCACTAAATGAGGCCACGGAAAAAACCCCACTGGAATGTTGTTAttgtaataaaacattttctcGGAAGGATTATTTGAAGGCACATATGCTAACTCACACAGGAAAAAAACCCTTTGATTGCAGTCACTGCGGCAAAAAGTTTACTCAAAAAGGCAGCTTAAATGTGCATTTTCGAAGGCACACCGGACTAAAACCGTTTGCTTGTGatcattgtgataaaaagtttacTAGAAAAAGCAGATTGAACTCACATTATCGTACGCACACAGGAGTAAAACCGTATAAATGTGGACATTgtgataaaacatttaaacgTAAAGATACGATGGAAGTGCATATGAAGCAGCACACTGGACGAAATTTGTTTGATTGTGATGTTTGTGATAAGAGCTTTACTCAAAAAAGTAACTTAATTGTGCATGTGCAAACGCACGCCGTTATAAAACCGTTTTCGTGTGGCCATTGTGATAAAACGTTTAGCCAGAAAACTAATTTGAACAGACATAATAAAAAGCATACTGGACAAGACCTTTAA
Protein Sequence: MDLFFVKIEKEEDTIEHKVKEELMDSSIYIKSLKEEDFTQFVKSEFVDKDELKNVLNNQAFHESEANKVEIKPVENFKEEEKIGSIETNAYGEFSNFNDEFNQNCPLNEATEKTPLECCYCNKTFSRKDYLKAHMLTHTGKKPFDCSHCGKKFTQKGSLNVHFRRHTGLKPFACDHCDKKFTRKSRLNSHYRTHTGVKPYKCGHCDKTFKRKDTMEVHMKQHTGRNLFDCDVCDKSFTQKSNLIVHVQTHAVIKPFSCGHCDKTFSQKTNLNRHNKKHTGQDL

Sequence clustering based on sequence similarity using MMseqs2