Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0012 1.2 10.1 1.4 18 39 135 153 128 158 0.82

2 7 0.3 3e+02 2.4 7.3 12 36 185 206 147 213 0.85

3 7 0.014 15 6.7 2.6 13 38 214 240 207 241 0.86

4 7 0.004 4.1 8.4 3.1 6 31 236 260 235 272 0.71

5 7 0.0029 3 8.9 1.7 15 34 272 290 260 297 0.77

6 7 0.00051 0.52 11.3 4.6 17 41 302 323 292 325 0.88

7 7 0.018 18 6.4 0.4 18 41 331 351 327 352 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0012	1.2	10.1	1.4	18	39	135	153	128	158	0.82
2	7	0.3	3e+02	2.4	7.3	12	36	185	206	147	213	0.85
3	7	0.014	15	6.7	2.6	13	38	214	240	207	241	0.86
4	7	0.004	4.1	8.4	3.1	6	31	236	260	235	272	0.71
5	7	0.0029	3	8.9	1.7	15	34	272	290	260	297	0.77
6	7	0.00051	0.52	11.3	4.6	17	41	302	323	292	325	0.88
7	7	0.018	18	6.4	0.4	18	41	331	351	327	352	0.88

Coding Sequence: ATGGATCCCCTCCTGGAAGAAACAAACGAACAGAAAAGAGGAATTAAAACTGAAGAAGAATTTTGGGATAGACCTGAATATGTAATACCTTTAAAAGGAGAAAATTTTACCCAATACGTTAAAGAAGAGTTGGTCTACGatgaatatattaaaaagagTTCATACAGTCAAAAAAGTCCTGGTAAATTTGAAGAAGAAGACTGTAAAGCAATTTTAGATCATGAAgtcaaagaagaagaagaaatagacAATGAAATGTTTAAAGGTAGTCGAAAGTTTTGTGGAAAGATGGATGAAAACATAGACACTAACGAAGTACAAATAGAAGTCCACGAACAAAGGATAAATCTTAAAGAGAAAGAAGGTTTTGATCAGCTTCATGTGGATGGTAAAAAACCATTTAAATGTGTTCATTGTAATAAAAAGTTCAGCCGAAAAGACCGTTTAGCTGAACATATTCGAATACACACAGGGGAGCAGCCCTATAAATGCGACCAATGCGATAAAAAGTTTAGacaaaaacaaacattaaatttacatattttaactcACACTAAAGAAAAACCACATAAATGTGACcaatgcaataaaaaatttagtcgaaaacagaatttaaatatgcatattctAACTCACACTGGAGAAAAAGCATATAAATGCGACCTATGCCATAAACTGTTTGGGCGTAAACAACACTTAACTAATCATTTTCTTACACACAATGGTCAGAAACCGTTTAAATGCGATTATTGCAATAAAAAGTTCAGCCAAAAGGGCAGTTTAAATAAGCATATTTCAACGCACAGTGGCCTAAAAGCATTTGAATGCTTCCATTGCAATAAAAAGTTCAGCCAAAAAGGCAGtttaaatatgcatattctAACGCACAGAGGCCTGAAAACATTTGAATGCTATCATTGCAATAAAAAGTTCAGTCAAAATAGCAATTTAAACAGGCATATTCGAACGCACAGTGGCCAGAAACCCTTTGAATGTGATCGTTGCAATAAAAAGTTCAGTGATAAAAGCAGTTTAAATAGGCATATTCGAACGCACAATGCCCAGTAA
Protein Sequence: MDPLLEETNEQKRGIKTEEEFWDRPEYVIPLKGENFTQYVKEELVYDEYIKKSSYSQKSPGKFEEEDCKAILDHEVKEEEEIDNEMFKGSRKFCGKMDENIDTNEVQIEVHEQRINLKEKEGFDQLHVDGKKPFKCVHCNKKFSRKDRLAEHIRIHTGEQPYKCDQCDKKFRQKQTLNLHILTHTKEKPHKCDQCNKKFSRKQNLNMHILTHTGEKAYKCDLCHKLFGRKQHLTNHFLTHNGQKPFKCDYCNKKFSQKGSLNKHISTHSGLKAFECFHCNKKFSQKGSLNMHILTHRGLKTFECYHCNKKFSQNSNLNRHIRTHSGQKPFECDRCNKKFSDKSSLNRHIRTHNAQ

Sequence clustering based on sequence similarity using MMseqs2