Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.024 24 5.9 0.6 18 41 140 160 131 167 0.86

2 7 0.055 57 4.8 0.7 18 29 168 179 161 199 0.77

3 7 0.062 64 4.6 2.5 17 40 199 219 187 221 0.83

4 7 0.00014 0.14 13.1 3.8 17 41 227 248 215 256 0.80

5 7 0.29 3e+02 2.5 0.3 18 28 256 266 249 277 0.85

6 7 0.00038 0.39 11.7 4.0 17 43 283 306 268 307 0.88

7 7 0.0017 1.7 9.6 4.9 18 39 313 331 312 334 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.024	24	5.9	0.6	18	41	140	160	131	167	0.86
2	7	0.055	57	4.8	0.7	18	29	168	179	161	199	0.77
3	7	0.062	64	4.6	2.5	17	40	199	219	187	221	0.83
4	7	0.00014	0.14	13.1	3.8	17	41	227	248	215	256	0.80
5	7	0.29	3e+02	2.5	0.3	18	28	256	266	249	277	0.85
6	7	0.00038	0.39	11.7	4.0	17	43	283	306	268	307	0.88
7	7	0.0017	1.7	9.6	4.9	18	39	313	331	312	334	0.93

Coding Sequence: atgGAGAAGATTACTATAAAGATAGAGGAAAGAAATGAGAATTATGAAGACCAGTTGGAATGGATAAAACCAGAACCTTCAGGTGAAGATTTTAAAATTGAGAAAGCTGTTAATATAAAGATAGAAGAAGAAATTGAGAATTACGGGGACCAGttggaaataaaaataaagcaagaACATATTGGGGAAATATTTTGTAACAATAGAGATAATGCTGATTCTAATTTTAATGACAATAAAAGATTTCTGAAACAAGATTTGTTTATCCTGGATGAAGAACatattaaaatagaaaatgcAGAACAAGAAAACCGTGATAATGAAGATATTAAGAAAGAAAAAGaacaaattttagataaattagTTGAAGAAAATGTGGAAGAAAATTTAAGAAGCTCCcctaacaaaaaattgtttttttgctcatattgtATGAagagttttttcacaaaaactggtTTAAGAGGTCATATTCGATCACACACTGAGGAGAGACCTCATAAATGCCCGCATTGTGATAAGGCCTTTTCTCGATTATcagatttaaaaatacatagtcGCAGTCATATGTTTACACATACTGAGGAAAGACCCCATAAATGCACGCATTGTGAAAACGCCTTTTTCCGAATATCAgatttaaaaacacatattcgtATTCATACTGGGGAAAGACCCTATAAATGCAAGTACTGTGAAAAAACCTTTTCACAATCATCAATTTTAAAAAGACATATTTATACACATACTGGTGAAAGACCCCATAAATGCCCGCAATGTGAAAAGACCTTTTCCCGATTATCAGATTTAAAAGTACATAGTCGCAATCATACTGGGGAAAGACCCTATAAATGCAAGTACTGTGAAAAAACCTTTATGCAATCATCacatttaaaaacacatattgTTTCAACGCACACTGGGATAAGACCCCATAAATGCACGCACTGTGAAAAGGCATTTACGATAGTTTCAAATCTAAAAAGACATATTTGTAGTAGTTTAGGGTTTTAA
Protein Sequence: MEKITIKIEERNENYEDQLEWIKPEPSGEDFKIEKAVNIKIEEEIENYGDQLEIKIKQEHIGEIFCNNRDNADSNFNDNKRFLKQDLFILDEEHIKIENAEQENRDNEDIKKEKEQILDKLVEENVEENLRSSPNKKLFFCSYCMKSFFTKTGLRGHIRSHTEERPHKCPHCDKAFSRLSDLKIHSRSHMFTHTEERPHKCTHCENAFFRISDLKTHIRIHTGERPYKCKYCEKTFSQSSILKRHIYTHTGERPHKCPQCEKTFSRLSDLKVHSRNHTGERPYKCKYCEKTFMQSSHLKTHIVSTHTGIRPHKCTHCEKAFTIVSNLKRHICSSLGF

Sequence clustering based on sequence similarity using MMseqs2