Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0016 1.7 9.7 1.0 11 38 79 103 72 107 0.77

2 9 0.0019 1.9 9.5 0.4 16 28 124 136 116 140 0.83

3 9 0.00056 0.58 11.2 2.8 3 29 140 165 138 175 0.77

4 9 0.012 12 6.9 0.7 16 35 180 201 167 203 0.74

5 9 0.0007 0.72 10.9 1.7 13 29 205 221 198 235 0.75

6 9 0.0018 1.8 9.5 1.2 9 35 234 262 226 264 0.78

7 9 0.0045 4.6 8.3 0.5 19 41 272 291 269 294 0.91

8 9 0.012 12 6.9 4.2 3 41 285 319 284 320 0.83

9 9 0.02 21 6.2 1.8 19 39 328 345 324 346 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0016	1.7	9.7	1.0	11	38	79	103	72	107	0.77
2	9	0.0019	1.9	9.5	0.4	16	28	124	136	116	140	0.83
3	9	0.00056	0.58	11.2	2.8	3	29	140	165	138	175	0.77
4	9	0.012	12	6.9	0.7	16	35	180	201	167	203	0.74
5	9	0.0007	0.72	10.9	1.7	13	29	205	221	198	235	0.75
6	9	0.0018	1.8	9.5	1.2	9	35	234	262	226	264	0.78
7	9	0.0045	4.6	8.3	0.5	19	41	272	291	269	294	0.91
8	9	0.012	12	6.9	4.2	3	41	285	319	284	320	0.83
9	9	0.02	21	6.2	1.8	19	39	328	345	324	346	0.93

Coding Sequence: ATGCATAGATGTATACAAAGTATTTCACATATACAATACAAAGAACAAGATTCTCCTGTAGTTAAGACTGAAATTGAGATTGAGGAAAATTACCTTGAAAATTACGAAGTTTTAGATAATGTAAAATATGAAATAGGAGAAGAATACAATTTTACATCTGATGTAAAACAGGATGATTCGGGAATACTTAATGGTATAAAAGAATCTAGTGAATTTGACAAGACTAACAAAGCTAAGGAGGAAACAAAAATGTTGATATgcaagtattgtgatagaacattttcaaaaaagcaCTATTTAATTATGCATGTTAGATCGCACGATAACAGTATGTTTATTATCAAGAAAAGTGACAAAGGAAAGAAAATAGTATTTGTTTGTAGATATTGTGATAAACAGTATGCAAGCAGACAGTATGTAAAAAAGCATATTCTGACACATAAGAACAAAGAAACATTTGTTTGTGTTTATTGTGGTAAGAAATATTCTActaaagaatatttaaataatcataTTCTGGTACATGAGAATAAAGaaacattttcttgtaattattGTGATAAACCATATTCGAccatggaatatttaaatacgCATATTTTGACACatgaaaacaaagaaaaatttgtTTGTAAATATTGTGATAAACAATATTCGACTGAAGAATATTTAAATAGGCATATTCTAGGGCATGAAAGCAAAAACAATGAAGATAAAAACACACTGGCCTGTATTTATTGCGATAAAAAAATGTCGAGTAAACAGTACTTATCAATCCATATGCTCTCACATACTGGTGAAAGACCATTTTTATGCAAATATTGTGACAAAAGTTTTGCACAAAAGGGAAATTTAAAGACTCATATTCGGACACATACTAGGGAAAAAATATACGAATGTTCAGAGTGTAACAAAAAATTCTCGCAACAGACAACGTTGAATCAACATGTTCGCACTCATTTAGGAATAAAACCTTTTCACTGTGAAACTTGTAAAAGGAAATTTACTCAGAAATCGAACTTAATTCAACATCTTTGTCCAGGTGTATAG
Protein Sequence: MHRCIQSISHIQYKEQDSPVVKTEIEIEENYLENYEVLDNVKYEIGEEYNFTSDVKQDDSGILNGIKESSEFDKTNKAKEETKMLICKYCDRTFSKKHYLIMHVRSHDNSMFIIKKSDKGKKIVFVCRYCDKQYASRQYVKKHILTHKNKETFVCVYCGKKYSTKEYLNNHILVHENKETFSCNYCDKPYSTMEYLNTHILTHENKEKFVCKYCDKQYSTEEYLNRHILGHESKNNEDKNTLACIYCDKKMSSKQYLSIHMLSHTGERPFLCKYCDKSFAQKGNLKTHIRTHTREKIYECSECNKKFSQQTTLNQHVRTHLGIKPFHCETCKRKFTQKSNLIQHLCPGV

Sequence clustering based on sequence similarity using MMseqs2