Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.1e-08 1.8e-05 25.3 0.1 5 40 1 37 1 41 0.91

2 3 5.6 3.3e+03 -1.2 0.0 18 30 82 94 82 95 0.82

3 3 7.5 4.3e+03 -1.6 0.0 31 45 121 135 120 137 0.61

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.1e-08	1.8e-05	25.3	0.1	5	40	1	37	1	41	0.91
2	3	5.6	3.3e+03	-1.2	0.0	18	30	82	94	82	95	0.82
3	3	7.5	4.3e+03	-1.6	0.0	31	45	121	135	120	137	0.61

Coding Sequence: ATGAGAGCGGCATTAGAAGACATTCAACGAAATAATATATCGTACAAACGAGCAGAAAAAAAATACGGCATAAGTAAATCTGCCTTGCAAcggaaaatgaaaaaattaaagtcaGCTAAAGATCCAAATTCTTTTAACTACGGGCTAAGCCACGgatttaaaaccatttttacaaaggAAGAAGAACTTCTGAAAGAATATCTCCTAGTATGTGCCAAAATGTGTTACGGTTTAACGATCGATGGTACTAGGAAACTCGCTTATAAATATGCAGTTGCGAATAATAAGACTGTCCCAGAAACATGGCATTTAAATGAGAAAGCTGGTCTAGAATGGATGAATAACTTTAGAAAACGACATCCAACTCTATCTCTTAGAAAGCCAGAAGCGACAAGCTTGAGCAGAGCTACTAGCTTTAACAAACACaacgttggtatttttttattttattaa
Protein Sequence: MRAALEDIQRNNISYKRAEKKYGISKSALQRKMKKLKSAKDPNSFNYGLSHGFKTIFTKEEELLKEYLLVCAKMCYGLTIDGTRKLAYKYAVANNKTVPETWHLNEKAGLEWMNNFRKRHPTLSLRKPEATSLSRATSFNKHNVGIFLFY

Sequence clustering based on sequence similarity using MMseqs2