Bgla030856.1
Basic Information
- Insect
- Brachypterus glaber
- Gene Symbol
- -
- Assembly
- GCA_958510825.1
- Location
- OY294054.1:4253302-4253898[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-11 2.6e-08 34.4 0.0 3 40 16 53 15 57 0.94 2 2 8.7 5e+03 -1.8 0.1 15 21 136 142 132 143 0.81
Sequence Information
- Coding Sequence
- aTGCCTAGAAGCAAAAACTGCGTAAAACGTGTAAAAGTAAACATTGATTCGTTAACAAATGCAGTAAATGCAGTTATAAATGAAAACATGGCTACACGTGCTGCTGCTAAACAGTTTAATGTGTCGAGAACTACGCTCCAAAATCATTTAAAGAAAAAGCAAGATGATCAAccttttgtttacaaaaataactGCGATAACTGGAAAGTTTTTTCCGAAGAACACGAAGAGATGTTGTgccaatattttattacttgcAGTAAGATGATGTATGGTGTTTCTATAAAAGGGGCTCGAAAACTTGCATATGATTTTGCAAAGGTTAACAATATTACTTATCCAGCTTCTTGGGATAGGCAGGGCCATGCTGGAAAAACATGGTATTATGGATTTATGAGTcgacataaaaaaatgtcattaagAAAGCCCCAAGCGACTAGCCTGTCCAGAGCCACGAGCTTTAACAAACACAAAGTTTCttccttttttaataaatataaagaattattaaataaataccatTTTGCTCCTGAAAACATATACAATGTAGATGAGAGTGGAATCTcttgtagcagttatgactgccactgtttttaa
- Protein Sequence
- MPRSKNCVKRVKVNIDSLTNAVNAVINENMATRAAAKQFNVSRTTLQNHLKKKQDDQPFVYKNNCDNWKVFSEEHEEMLCQYFITCSKMMYGVSIKGARKLAYDFAKVNNITYPASWDRQGHAGKTWYYGFMSRHKKMSLRKPQATSLSRATSFNKHKVSSFFNKYKELLNKYHFAPENIYNVDESGISCSSYDCHCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01442212;
- 90% Identity
- -
- 80% Identity
- -